Panicum virgatum (switchgrass): 120661888
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Entry
120661888 CDS
T07260
Name
(RefSeq) serine/arginine-rich splicing factor SC35-like isoform X1
KO
K12891
serine/arginine-rich splicing factor 2/8
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120661888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120661888
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120661888
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_5
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
120661888
NCBI-ProteinID:
XP_039796819
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Position
2N:65987726..65991020
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AA seq
257 aa
AA seq
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MSRFGRSGPPPIRDTYSLLVLNITFRTTADDLFPLFDKYGEVVDIYIPRDRRTGDSRGFA
FVRYKYEDEAQKAVDRLDGRVVDGREIMVQFAKYGPNAERINKGRIVEPVPRSRGRSRSR
SPRRRYRDDYRDDYRDRDYRRRSRSRSRDRYSRDSYRERDYRRHSRSRSYSPDGYKKHGR
DSLSPARRSPSRSRSQSRSRSYSPDDNKRRGRDSSASPASRSPSRSPPRKTSPSPERSPV
RRKRNDDRSPRSRSPST
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcttcgggcgatccggcccgccgccaatccgcgacacctactccctcctcgtc
ctcaacatcaccttccggacgacggctgatgacctcttcccgctcttcgacaagtacggc
gaggtcgtcgacatctacatccccagggaccgcaggactggtgactcccgaggcttcgcg
ttcgtgaggtacaagtacgaggacgaggcgcagaaggcagttgataggctcgatgggaga
gtggtagacgggagagagatcatggtgcagtttgccaaatatggcccaaatgctgaacgg
attaataaagggagaatagtggagccagtaccaaggtcaagaggccgttccagaagccgc
agtccaagacggaggtaccgtgatgattatcgagatgattaccgggatagagattataga
cgacgaagtcgtagtcggagtagagataggtattcacgtgacagttacagagagagggat
tatcgtcgccatagcaggagtcgcagctacagccctgatggttacaagaagcatgggagg
gacagtttgtctcctgcacgtagaagtcctagtcgtagccgaagccaaagccgaagtcgc
agctacagtcctgatgataacaagaggcgtggcagagacagcagtgcatcacctgcgagt
aggagccctagccggtccccacctcgcaagacatcaccttctcctgagagatctcctgtc
aggcgcaagcgcaatgatgaccggtctccacgttctcggagcccttcgacatga
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