Panicum virgatum (switchgrass): 120661896
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Entry
120661896 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120661896
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120661896
09122 Translation
03013 Nucleocytoplasmic transport
120661896
03015 mRNA surveillance pathway
120661896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120661896
03041 Spliceosome [BR:
pvir03041
]
120661896
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120661896
Spliceosome [BR:
pvir03041
]
Complex C
Other components
EJC/TREX
120661896
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
120661896
NCBI-ProteinID:
XP_039796832
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Position
2N:66188613..66194069
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AA seq
817 aa
AA seq
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MSTYPMLNDRPIDQWMVTELKDELLRRNLPVTGLKDDLVKRLFEAIQDKILHGREKTSGG
IPEDLKGGEIPGSVDASVNQASIEEHIGEVASEVTGQGAGLGISVTEAYDESILATSEVT
QEAVAGTAEASQRSFDAIAEVESSLVDTAATDETNGDVLEPASSGNTRVNEAYPHSEDLG
DTIEKTPEDDTNNKMAVDDVPSDFTGGDIKLRLNMHNKILETEDVPAPPDDIIILHGDHE
DADAVAAADPEDDTSKKIDIGVVSDVSHTTIKLGVKVDCKTEQEELLALPDAIALHADPK
DADVLAAAENKIPKDNFSVDTLMSGNGHGDPKCSNGDTKPFLCRDKDKVSEVKTDLDFQI
KCVSIFSDNISTSEKNDVKGNLNADGCDLELEAKQEICKPSSTIPSPGDHLQVLDVNKEL
HKTGTSLQELGSTSNIDLDREESPDGSSHEKLNLDRSSGDESMDEDVMESRHADSNIKPD
DLGGKTVVTSEHVLKEVSLLDNAVESSSAHTNEVVAEEKPPSPAEKRKLEGRDVIANNEP
IKRQRQWKTDAVNISEQQAPKLIGTGTPNKVFHSALKHSFGRPGIVASGDYPKERIVPPA
QKPATTSLRIDRFVRPFTLKAVQELLGKTGSVCSFWMDHIKTHCYVTYSSVEEAVATRNA
VYNLQWPPNNHNYLVAEFVDPQEVKLKLEAPPPSKVPTSPSAATASQAAPFQQHTANQTL
PPHPATGLLPTPAHLAATALLPTPAPLDKLPPTSGPGPASDMLPPPPPRNLEHARTLDDL
FKKTQAYPRIYYMPLSEEEVSAKLAARNNAKRGDSGL
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacatatcctatgttgaacgaccggccaattgatcagtggatggttactgagttg
aaggatgagcttctgcgaaggaatctgcctgtcactggtttgaaggatgatcttgtgaag
aggctctttgaggccatccaggataagatacttcatggtagggaaaaaacaagtggtgga
attcctgaggacctgaaagggggtgaaattcctggttctgttgatgcatctgttaaccag
gcttcaatcgaagaacatattggtgaagttgcttctgaggttacgggacagggggcaggt
cttggtatctctgttacagaagcttatgatgaaagtatattagctacttcagaagttact
caggaggctgtggctggtactgcagaagctagtcagagaagttttgatgctattgcagaa
gttgaatcttctctagttgatacagcagcaactgatgaaaccaatggggatgtcctagaa
ccagcttcaagtggcaatactagagtgaatgaagcatatcctcattctgaagatctcggt
gatactattgagaagaccccagaagatgacaccaacaataaaatggctgttgatgatgta
ccttctgattttactggtggtgacatcaagttacgcctcaatatgcacaacaaaattcta
gaaactgaagatgtacctgcacctcctgatgatatcatcatattgcatggtgatcatgag
gatgctgatgctgttgcggctgcagatccagaagatgacaccagcaagaaaattgacatt
ggtgtagtgtctgatgtttcccatactactatcaagctaggtgtcaaggtagactgcaaa
actgaacaggaagaattactggcactgcctgatgctattgcattgcatgctgatcctaag
gatgctgatgttcttgcagctgcagagaacaagattcctaaagacaatttcagtgtggat
actttgatgtccggcaatggccatggagatcctaaatgctctaatggggacaccaagccc
tttctgtgcagggacaaagacaaggtatctgaggtcaaaacagatctagactttcaaatt
aagtgcgtgtcaattttcagtgataatatatccactagcgaaaagaatgatgtaaagggc
aaccttaatgctgatggttgtgatttagaactagaggcaaagcaggagatatgcaaacca
tcatccaccattccctccccaggtgatcatttgcaggtgttggatgtcaacaaggagctg
cataagactgggacctctttgcaagagttaggctccacaagtaatatagacttagacaga
gaagagagtcctgatggtagttctcatgagaaacttaatctcgataggagttcaggtgat
gaatcaatggatgaggatgtgatggaaagtaggcatgctgattccaatatcaaacctgat
gatcttggaggaaagacagtggttacctcagagcatgtgttgaaagaggtatctctcctt
gataatgctgttgagagttcctctgcacacacaaacgaagttgtagctgaagagaagcca
ccaagtccagctgaaaagaggaaacttgaaggtcgagatgtcattgcaaataatgagcca
atcaaacggcagcgccaatggaagacagatgctgtcaatatttctgaacaacaagcaccc
aaattaattggcactggtactccgaacaaagtctttcactctgctctgaaacattcattt
ggcaggcctggtatagtagcaagcggagattatccaaaggagcggatagtaccacctgct
caaaaacctgcaacaacttccttaagaattgatagatttgtgcgcccatttaccctgaaa
gctgtacaagagcttcttggtaaaactggatctgtttgtagcttttggatggatcatatc
aagacccactgctatgttacttactcttcagtggaggaagctgtggctacgaggaatgct
gtctacaacctccagtggcccccaaacaaccacaactatttggtcgctgaatttgttgat
ccacaagaggttaagctcaaacttgaagcccctcccccatctaaagtgcctaccagtccg
agcgcagctacagcatcacaggcagcacccttccaacaacacactgctaaccaaacccta
cctccccatcctgctactggtctattgcccactccagcacatcttgctgctactgctctg
ttacccactccagcacctcttgacaagctgccgcctacctctggccctgggccagcaagt
gatatgcttcctccacctcctccaaggaatctggaacatgcccggactctggatgatctc
tttaagaagacacaggcgtatccaaggatttactatatgcccttgtccgaagaggaggta
tcagctaaacttgcagctcgcaacaatgctaagaggggggatagtgggctttag
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