Panicum virgatum (switchgrass): 120661924
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Entry
120661924 CDS
T07260
Name
(RefSeq) exosome complex component RRP41-like isoform X1
KO
K12587
exosome complex component MTR3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120661924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120661924
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120661924
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
120661924
NCBI-ProteinID:
XP_039796868
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Position
2N:66492570..66496007
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AA seq
267 aa
AA seq
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MSAQAGAGTYSPAAAAGGKRREKREELRRLLAEDADWPRADGRSFHDCRPAFMQTGLTTA
ASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRGQGADNKEYS
SMLRKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMCDLVTSV
SVSCFGKNIVIDPTSDEEAWQDGSLMVAFMLARKEITQLTLTREWSDGKITNVYATYCTN
IGSISVAIGNILLCSSTGGRALHGCLQ
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgcaggcgggggcagggacgtattccccggcggctgcggcggggggcaagcgg
cgggagaagagggaggagctgcggcgcctcctcgccgaggatgccgactggccccgcgcc
gacggacgctccttccacgactgccggccagcgtttatgcaaacagggctaactacggct
gcatcagggtctgcttatgcggagtttgggaagacaaaggtcattgtatcagtgtttggg
ccaagagaaagtaagaaagcaatgatgtacagcgatgttggtaggctcaattgcaacgtg
agctatacaacatttgccactccagtgcgtggacagggagcagacaacaaagagtactca
tcaatgcttcgtaaagctttggaaggcgctgtaatgttacacacttttccaaagactact
gttgatgtttttgccttggttcttgagtctggtggcagtgatctgcccatcattatatca
tgtgctagtcttgcactggcagatgctggaataatgatgtgtgaccttgttacatctgta
tccgtgtcctgtttcggaaagaacatcgtcatcgatccaacctcagatgaggaagcatgg
caagatggaagcctcatggtagctttcatgctagcccgcaaggagataacccaactcaca
ctcactagagagtggagtgatggaaaaatcaccaatgtatacgctacctactgcactaac
ataggtagtatatctgttgcaattggtaacattttgttatgttcatcaacaggcggtaga
gctttgcatggatgcttgcagtaa
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