Panicum virgatum (switchgrass): 120661929
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Entry
120661929 CDS
T07260
Name
(RefSeq) pseudouridylate synthase 7 homolog isoform X1
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120661929
Enzymes [BR:
pvir01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
120661929
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
120661929
Prokaryotic type
120661929
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TruD
PUS7L_N
R3H_PUS7L
Motif
Other DBs
NCBI-GeneID:
120661929
NCBI-ProteinID:
XP_039796877
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Position
2N:complement(66525404..66544091)
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AA seq
763 aa
AA seq
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MRGRRLLNPLPLLRTPKPLSRPLAAHFRGARARAAAPAHPSAPLPAPRCGPLAEPDVGIS
RFASTVPGFRGALKQRYSDFVVHEVARDGALVRLTSFDLPDVDECGDNAEDGDADEDYSR
ALESFRLLCGEADHDALRGLLGSVLDGGDGNLSPIILSADADKAHRSEVHEFIKRNFKFL
ITDTVDHSDGIQKCIRVRLGSGPRGGRGRTKRGMGSSGWRDDRPFDSRGSTSWPYHLGKF
LRFHLYKENRDTQEALGVIGKMLGVQPRSFGVAGTKDKRAVTTQQVTLFKVHASRLAALN
NKLIGIRVGDFSYVNEGLVLGQLKGNRFAITLRNVVAESDDVIKAAVDGLSKNGFINYYG
LQRFGSGSVPTHIVGAALLRGEWRHAVSLILGTRVHYKGHGDIDVALSGIPRHLTVERAM
HIYYTSPGYMASNWSWTPGAYGVLLYIQSKMSAVLLQLQLQVRKLGELQRLKKYPGNYLQ
ALMAIPKTLRLMYVHSYQSYLWNHAASMRVEKYGILQVVEGDLVYKKGCSLGEAATVDTF
DDNGSHTNSPEMEMSYETLPEEVIQSLKIVDSEDLLKAVYTFEDVVLPLPGSETLLPRNE
VAGIYHEIAKKDGISLIESVHGIKDFSITGMRGGYRRVLQRPIDFKWDLMTYTEDNVPLV
ETDLAVLSKTQPSEANKLLSDGTSSCPSCDSSLDASLYTSGSTTDGTEASSEKTKSIGIS
DLLPKKLAVKLEFTLPASSYATMAIRELTKTSTSVAYQKTLNC
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggacgccgtctcctaaaccccctcccgctcctccgcacccctaaacccctctcc
cgtcccctcgccgcccacttccgcggcgcccgcgcccgcgcggcggcccccgcccatccg
tccgcgcccttgcccgcgccgcgctgcgggcccctggccgagcccgacgtcggcatctcc
cgcttcgcctccaccgtaccgggcttccgcggcgccctcaagcagcgctactccgacttc
gtcgtccacgaggtcgcccgcgacggcgccctcgtccgcctcacatccttcgatctcccc
gacgtcgatgagtgtggagataatgcggaggacggcgacgccgacgaggactactcccgc
gcgctcgagtcgttccggttgctctgcggcgaagcggatcacgacgcgttgaggggattg
ctggggagtgttttggacggaggagatggcaatttgtcgccaatcattctctcagctgat
gccgataaggctcatcgttcggaggtgcacgaattcatcaagaggaatttcaagttcctg
atcacggatactgttgatcacagtgatgggattcagaaatgtattagggtgcggttgggg
tcagggccacgcggtgggagagggaggactaagagaggcatgggcagttcaggctggaga
gatgacaggccgtttgatagtagaggctctacatcctggccttatcacctggggaagttc
ctgaggtttcacctttacaaggagaacagagacacgcaagaggcactaggagttatagga
aagatgctaggggttcagccaagatcgtttggagttgcggggacaaaggataaacgtgct
gttacaacccaacaggtgacgcttttcaaggtacatgccagtaggttagccgctcttaat
aacaaacttataggtatcagagttggagactttagttacgtgaacgagggtcttgttctt
ggacaactcaaagggaaccgatttgcaattactttgaggaatgttgttgcagaatcggat
gatgtgataaaggctgctgttgatggcctgagtaaaaatggatttatcaattactacggc
ttacagcgctttggtagtggttcagtacctactcacattgttggtgctgctttgcttaga
ggagagtggagacatgctgtcagcttgattcttggtacaagggtacattataaggggcat
ggtgatattgatgtagcacttagtggcattccccgacatctcacagttgagagagctatg
cacatttactacacatctcctggatacatggcatctaattggtcctggactcctggtgct
tatggagtcctcttatatatacaaagcaagatgtcagcggttctgcttcagcttcagctg
caagttaggaagcttggagagcttcagcgtttgaagaagtaccctggcaactatctacaa
gcactaatggctatacctaaaacattgagactgatgtatgtacatagttaccagagttac
ctatggaaccacgctgcaagtatgagagttgaaaagtatggtattttacaagttgtagag
ggcgacttggtttacaaaaaggggtgctctcttggagaagcagctacagtagatactttc
gatgataatggtagccacactaattcaccagaaatggaaatgtcttatgaaacacttcct
gaagaagtgatccagtctttgaagatagttgattctgaagatttattgaaggcagtttac
acttttgaggacgttgtcctccctttgcctggttcagaaacattgcttcctaggaatgaa
gttgctgggatttatcatgaaatagccaagaaggatgggattagcctgatagagagcgtc
catgggatcaaggacttctcgattacaggaatgagaggaggttaccgtcgagtactccaa
cgacctattgattttaaatgggacctaatgacttacacagaagacaatgtacctttagtg
gaaactgatttagctgttctatccaaaacacagccatcagaagcaaataagctgctatct
gatgggacttcgagttgcccatcatgtgattctagcttggatgcttcattgtacacctct
gggtcaaccactgatggcactgaagctagctcagagaaaaccaaatctattggcatctca
gatctgttacccaagaagctggctgtaaaattagaatttactctaccagcatcatcctat
gccacaatggccatcagggagttgacgaagacttcaacttcagttgcttaccagaaaaca
ttgaactgctga
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