Panicum virgatum (switchgrass): 120661953
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Entry
120661953 CDS
T07260
Name
(RefSeq) DNA annealing helicase and endonuclease ZRANB3-like isoform X1
KO
K14440
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120661953
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120661953
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Ortholog
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GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HARP
Motif
Other DBs
NCBI-GeneID:
120661953
NCBI-ProteinID:
XP_039796918
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Position
2N:66742164..66752733
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AA seq
730 aa
AA seq
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MAGLDGGGGGGWGGYYNDDDWDFSAEQLDQIERDAIRQLAERKASSSAASTAPVPAPALG
AVSPLPSRATAQAVAASSPLGGNHPAARASLEARFGKVEAVSPLRPCDSNTSRNAVNNSQ
GSSPKVSVNLFLHSSGVIAAKFPYNQLLVDAFHKIPKAGWNAKERVWMFPPSSLSTAEEV
LCSVPGLTVEVHKLDPLVHRALLAASSTKDLRDLYDRIPTDVESKLMPFQREGIRFVLQH
GGRALIADEMGLGKTLQAIAVASCLHDFWPVLVISPSSLRLHWASTIQNWLNIPMEDILV
VLPQTGGSHKAGFRLVYSNTKGDIRLDGVFNVISYDVVPKIQSTLLDSDFKIVIADESHF
MKNGQAKRTIASLPVLQKAKYAVLLSGTPALSRPIELFPQLQALYPTVYKSVNEYGNRYC
KGGFFGMFQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLSEKDVKHVRP
IFQELETLKIKIESADSKEMIDSLKFTQKNLITKLYTDSAVAKTPAVLDFLGTVIEAITK
FFALPIYIQADCKFLIFAHHQPLIDAIEQYLVKKKVKCIRIDGQTPVTTRQTLVADFQNK
DDIKAAVLSIKSGGYGLTLTAASTVIFAELSWTPGDIIQAEDRAHRIGQVSSVNVYYLLS
HGTIDDLIWGAVQGKLENLGQMLDGQEKTLDVSQIDSRPSPSKQQKTLDGFLKRGSTSTE
GQPSTKHPRF
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcctcgacggcggcggcggcggcggctggggcggctactacaacgacgacgat
tgggacttcagcgcggaacagctggaccagatagagcgggacgccatccgccagctcgcc
gagcggaaggcctcctcctcagcggcctccaccgctcccgtccctgcccccgctctcggg
gccgtctcgccgctcccctcccgcgccaccgcgcaggcggtggccgcctcgtcgccgctc
gggggtaaccaccccgctgctagggcctctttggaggcccgcttcggcaaggttgaagcg
gtttctcctttgcggccatgtgactcaaacacatcgagaaatgcagtgaataatagtcag
ggaagttcacctaaggtatctgtaaatcttttcctccattctagcggtgtgattgcagcg
aagtttccgtacaatcagttacttgtggatgcatttcacaagatcccgaaagccggctgg
aatgcgaaagaaagggtatggatgttccctccctcatctttatcaacagcagaggaggtt
ctttgttccgtaccaggattaactgtggaggttcacaaattggatcccctagttcatcgt
gctttacttgcggcttcaagcaccaaagatcttcgagatttgtatgacaggattcccact
gatgttgagtcgaagcttatgccgtttcagcgagaaggcatcaggtttgttttacagcat
ggtggcagagccctaattgcggatgaaatgggtcttggaaagacattacaggcaattgct
gttgcttcttgccttcacgatttctggccagttcttgtgatctctccatcttccttgcga
ttacattgggcatctacgattcagaattggctcaacatccccatggaagatatattggtg
gtattgccacaaactggaggatcacacaaggcaggattcagactagtttactcaaacact
aaaggagatattcgtttggatggggtattcaatgtgatatcttatgatgtagttcccaag
atacaaagcacacttctggattcggatttcaagattgttatagctgatgaatcacatttt
atgaagaatggccaagcgaagagaacgattgcttcacttccggttctgcagaaagctaaa
tatgctgttttgcttagtggaactcctgctctgtctcgcccaattgagctgtttcctcag
ctccaggcgttgtatcctactgtgtacaagagtgttaatgagtatggcaatagatattgc
aagggtggcttttttggaatgtttcaaggtgctagcaatcatgaagagctgcataatttg
atgaaagcaactgtcatgatccgtaggttgaagaaagatgtcctttcgcagttgcctgtt
aaacgtaggcaacaggtcttccttgatttaagtgagaaagatgtgaaacatgtccgtcct
atatttcaagagttggagacactgaagatcaaaatcgagtctgctgactccaaggagatg
attgactccctcaaatttacacaaaagaatcttatcactaagctctacaccgattcagca
gtggccaaaactccagctgtgttggatttcctgggcactgtaattgaggcaataactaaa
ttctttgctttaccaatctatatccaggcagattgcaagttcttaatatttgctcatcac
caacccttgattgatgctattgaacaatatctcgtgaaaaagaaagtaaagtgtatcaga
attgatggccagacacctgtgactacaaggcaaacattagtcgcagatttccaaaacaag
gatgacatcaaggcagcagtgttgtctatcaaatctgggggctacgggttaactttgaca
gcagcgagtacagtaatctttgctgagttatcatggactcctggcgacattattcaagct
gaagatcgcgcccaccggattggccaggtttcatcagtaaatgtatattaccttctctcg
catggcacaatcgatgaccttatctggggcgctgttcaaggcaaacttgagaatctggga
cagatgctggacgggcaggagaagacactggacgtttcccagattgacagcagaccaagc
ccctccaagcagcagaagacgctcgacggcttcctgaagcggggcagcacctccactgag
ggtcagcccagcactaagcaccctcggttctga
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