KEGG   Panicum virgatum (switchgrass): 120662002
Entry
120662002         CDS       T07260                                 
Name
(RefSeq) uncharacterized protein LOC120662002
  KO
K03873  elongin-B
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120662002
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120662002
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120662002
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul2 complex
    Adoptor protein
     120662002
   Cul5 complex
     120662002
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     120662002
SSDB
Motif
Pfam: ubiquitin Rad60-SLD UCH_UBL1 Dsc3_N Ubiquitin_2 UBL_UBAC1
Other DBs
NCBI-GeneID: 120662002
NCBI-ProteinID: XP_039796980
LinkDB
Position
2N:67309155..67311944
AA seq 94 aa
MYIRVKRNKSTYFIQCEPTETTLSVKQKLHSLIDQPPSNQQLVLLATNDVLEDSKTLAEQ
KVENDSVVALALRKDDDEFEEIFIARPEDFMPSS
NT seq 285 nt   +upstreamnt  +downstreamnt
atgtatatccgagtgaagcgcaacaagagtacctacttcattcaatgtgaaccaacagag
acaactttgagcgtcaaacagaagttgcattcactaatagatcaacctcctagtaatcag
cagttggtcttgttggctaccaatgacgtgctcgaagattcaaagacattggcagaacaa
aaggtggaaaatgattctgttgttgccttggcactgagaaaagatgatgatgagtttgag
gaaattttcatcgccaggccagaggatttcatgccatcgtcatga

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