Panicum virgatum (switchgrass): 120662006
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Entry
120662006 CDS
T07260
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120662006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120662006
03041 Spliceosome [BR:
pvir03041
]
120662006
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120662006
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19-related factors
120662006
Complex C
120662006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
TPR_2
PPR
TPR_12
ARM_TT21
UTP6_C
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
120662006
NCBI-ProteinID:
XP_039796985
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All DBs
Position
2N:complement(67317960..67322932)
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AA seq
928 aa
AA seq
DB search
MPSAAGPVAVASAGSAAKAAPSPAVGISPELYPTEDDLPYEEEILREPFKLKGWWRYLVA
RAAAPFAKRAVIYERALKALPGSYKLWHAYLRERLDHARPHPIDHPTYSSLNNTFERALA
TMHKMPRIWVLYLTSLLDQRLLTRSRRALDRALRALPVTQHDRIWPLYLRLASLPACPVE
TSLRVFRRYLQFDPSHAEDFINFLISANRWQEAADRLASVLNDDGFRSVKGKTRHQLWLE
LCEILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRGLFEKARDVFEEGV
SSVVTVKEFSVVFEAYTQFEQSMLAAKLEAAEEEGAEDEDEGGGRKNGMDKLSKKFLEDF
WLNDEDDTDLRMARFEWLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPARQVATYV
EAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKRATQVNYKAVDHLASIWCEW
AEMELRHNNFDKAIELMRQATAEPSVEVKRRAAAEGNEPVQMKVHKSLKLWSFYVDLEES
LGTLDSTCAVYERILDLRIATPQIILNYAYLLEEHKYFEDAFKVYERGVKIFKYPHVKAI
WVTYLTKFVQRYKRSKLERARELFHEAVQQAPPDEKKPLYLQWAKLEEDYGLAKRAMNVY
DEAVRAVPNSEKMVMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVLTMCMKFAELE
RSLGEIDRSRAIYVHASNYADPNNSDFWKKWNDFEIQHGNEDTFREMLRIKRTVAASRSQ
THFILPEYLMQRDQRLNLDEAVDTLKRAGVPEDEMAALERQLASGPSTAPPAAQNNTPAS
ANRMMNFVSAGVEAQAESSRQQAGNNEDIELPDESDDEEPDVQIAEKSVPAAVFGELGKR
AAESQEGSSGAQENEQLGALERIKRRRQ
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggcggcgggtccggtggctgtggcgtcggcggggtcggcggcgaaggccgcg
ccctccccagccgtcggaatctcgccggagctgtacccgaccgaggatgacctgccctac
gaggaggagatcctgcgggagcccttcaagctcaaggggtggtggcgctacctcgtcgcg
cgcgccgccgcgccgttcgccaaacgtgccgtcatctacgagcgcgcgctcaaggcgctc
ccggggagctacaagctctggcacgcctacctccgcgagcgcctcgaccacgcgcgcccc
caccccatcgaccacccgacctactcgtcgctcaacaacacgtttgagcgggcgctggcg
acgatgcacaagatgccgcgcatctgggtcctctacctcacgtcgctcctcgaccagcgc
ctgctcacgcgttcgcgccgcgccctcgaccgagccctgcgtgcgctgccggtcacgcag
cacgaccgcatctggccgctgtacctgcgcctcgcgtcgctcccggcctgccctgtcgag
acgtcgctccgggtgttccgccgctacctccagttcgacccctcccacgcagaggatttc
atcaatttccttatatccgccaaccgctggcaagaggctgctgaccgactggcatccgtg
ctcaacgatgatggtttccgctctgtcaaggggaagaccaggcatcagctatggctcgag
ctctgtgagatcctcaccaagcatgctgatgaggttgctggcctcaaggtggatgccatc
ctgcgtggcgggattcggaagttcaccgacgaggttggcaagctgtggacctcgctggct
gattactatgtcaggagaggccttttcgaaaaagctagagatgtatttgaggagggtgtt
tcttcggtggttaccgtgaaggagttcagcgtggttttcgaggcatatacacagtttgag
cagagtatgcttgcagcaaagctggaggctgccgaggaagagggggctgaggacgaggat
gagggagggggcaggaagaatgggatggataaattatcaaagaaattccttgaggatttc
tggttgaacgatgaggatgatactgatttgaggatggcaaggtttgagtggctgttggat
cgtagaccagagcttcttagcagcgtgctgttgcgacagaatccacacaacgtggaggag
tggcacaggagggtgaagctttttgagaaggatcctgcaaggcaagtagcgacatatgtt
gaggccgtgaaaactgttgacccaatgaaagcagttgggaaaccccatactctatgggtg
gcatttgcaaagatgtatgagaaacacaatcgtctagatagcgctgaagatatcttcaaa
cgggctactcaagtgaattataaggcagttgaccacttagccagtatctggtgtgaatgg
gcagagatggagctgcgacacaacaattttgacaaggctattgagctgatgaggcaagca
acagcagagccctctgttgaggttaagaggcgagctgctgccgaggggaacgaacccgtc
caaatgaaagtacacaaatctttgaaactgtggagcttttacgttgatctggaagaaagt
cttggaactttggactctacctgtgcagtttatgagagaatattagatttacggattgct
actccacagataatactcaattatgcatatcttcttgaggagcacaagtatttcgaagat
gcatttaaagtgtatgaaaggggcgtgaaaatattcaagtatccccatgttaaggccatt
tgggtgacctacctcacaaagtttgtacagagatacaagagaagcaagttagaacgagca
agggagcttttccatgaagctgtccaacaggctcctccagatgaaaagaagcccctatat
ttacaatgggctaaactggaggaagactacggtcttgcaaaacgtgctatgaatgtttat
gatgaagctgtaagggctgttcctaacagtgaaaaaatggtcatgtatgaaatctatata
gcacgtgctgctgagctgttcggtgttccaaggacaagacaaatatacgagcaagcaatt
gaatctggcctcccggacagagacgtgctgacaatgtgcatgaaatttgctgagctagaa
agaagccttggggaaattgaccgttcacgtgctatctatgtgcatgcatccaactacgct
gatccaaacaattctgacttttggaagaagtggaatgactttgaaatccagcatggtaat
gaagacacattcagggagatgcttcgtattaaacgtacagtggctgctagccgcagtcag
acgcatttcatactacctgagtacctgatgcagagggatcagaggctaaatctggatgag
gcagttgacactctgaagcgtgctggtgttcctgaggatgagatggcagccttggagagg
caactagcttctggaccatccactgcgccaccagcagcacaaaacaataccccagcctcc
gctaacaggatgatgaactttgtcagtgctggagtagaggcgcaggctgagagtagcagg
caacaggctggtaacaatgaggacattgagctgcctgatgagagcgatgatgaggaaccg
gatgtccaaattgcagagaagagcgttccagctgctgtgtttggcgagctcggcaagaga
gctgctgagagccaggagggtagctccggtgcccaagagaatgagcagctgggcgccctt
gagaggataaagagacggcgtcaatag
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