Panicum virgatum (switchgrass): 120662010
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Entry
120662010 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120662010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120662010
03009 Ribosome biogenesis [BR:
pvir03009
]
120662010
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120662010
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
U1 related factors
120662010
Complex B
120662010
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120662010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
AAA_19
Motif
Other DBs
NCBI-GeneID:
120662010
NCBI-ProteinID:
XP_039796993
LinkDB
All DBs
Position
2N:67354894..67362111
Genome browser
AA seq
1365 aa
AA seq
DB search
MAAQEAAAATADSSGPRFAPDDPTLPAPWKGLIDGATLYYWNPETNVTQYEKPAAAAAAT
PPLPAGPPPATPAQVPEPAPGAFSQPGLQFGQVGQATHQERPGQAVYPQAGQLGRQQQNQ
QPAQQQPFQHVPQHQASFQQVPYQQQQPHMPNQPPQYPNPQQQQPHMPSQPPQYANPHPQ
YMPYQQGPYMQPQQQQQGPPYPYQADQQPLPQAAYNQGQGQQPPTPQAAYNQGQGQQPPM
PQPSYNQSQQPVIPQSGYNQGQQPQMPHGAYNQSQQPQGMRIPQNQVQHPQQSPSFHPSQ
TPQLPQVSQSQGLQMPSQQGQLQHGLQFSQHGKQPLSHGQQSPLLKDDDAGGHEGKRTGF
SLPLSQQRGQAPLSSQQLISSHQYPGAVNQPNIPGVGGPLYPAKHLHGGSSPAETNNMGL
MNSPAQMHQGAVPNHIGPSPVRPPMGFEMGNRDGHFERDDPHSYGRFDGANTFQQQPKLA
AVPPSQNPLGMRNGPPYPRADNFGGYNMAPPHSVPNPHNHGPLPMGASARPPSKMFGPPD
FPGISSADAYRQHHEVTAMGENVPAPFMTFEAAGFPLEILREIHAAGFSNPTPIQAQTWP
VALQNRDIVAIAKTGSGKTLGYLIPAFMHLRRCHNNPMLGPTVLVLAPTRELASQIQDEV
VKFGRSSRVSCTCLYGGASKGPQLRELERGADIVVATPGRLNDILEMKKISLHQVSLLVL
DEADRMLDMGFEPQIRKIVDEIPRTRQTLMYTATWPKEVTKIAGDLLRDPVQVNIGSIDE
LVANKSITQYVEVVPPMDKQRRLEQILRDQERGSKIIIFCATKKMCDQLARGIGRSFNAV
SIHGDKSQVERDNVLNQFRTGRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRI
GRTGRAGATGVSYTFFSEQDWKYAGDLVKLLEGANQHVPPQLLDMAARGATGGLRNQAAG
MSRWDGPGGGRFDPGIGGPVGYGGVREGPGGFGGHEGPGGFGSREGPGGFGVHEGPGGFG
GRGGPDGFSGREGPGGFGGTEGPGGFGGRKGPGGFSGRDGPGSGGFGGRGGRGSGGFGGR
GGTSPGGFGGRGGRGDSPGFGGRGRGDSPGFGGRGRGDFGRGRGDSPGFGGRGRGDFSGG
RGGRGRGFGGRGRSDRGPHDRYISDGRGRYDNRRGFGDKGKDRSYSRSPGRGRSRGYDRS
GSRSLSRSRSRSRSWSRSRSWSRSRSRSSSRSRSRSRSRDHGAAPERRPRARSGFDVLPP
AAGAAAGPVLTGPVPVSVPVSGPAVSPVPSLAHAQSLTDTSAMSPMSPGGLVQQAAAPLN
SMNDGNFSGPQAGQPFHGTDAAIPSFPAAETFPRSAIQQATPDVQ
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcaggaggcggccgcagccactgcagattcgtctggccctcggtttgcccct
gatgacccgacactccccgcgccctggaaagggctgattgatggcgcgacactgtactac
tggaacccggagacaaatgtgacccagtacgagaagccggctgctgctgctgctgcgaca
ccccctttacctgcgggtcctccgccagcgacccctgcgcaggttccagaaccggcacca
ggggctttttcacagcctggtttgcagtttggccaagttgggcaggcgacacaccaggag
cgacctggccaggcagtttatcctcaggctggccagctaggtcggcagcagcagaatcaa
cagcccgcccagcagcagccgtttcagcatgttcctcaacatcaagcttcgtttcagcaa
gtgccgtatcagcaacagcagccgcacatgccaaatcagccacctcaatacccgaacccg
cagcaacagcagccacacatgccaagtcagccacctcaatatgcgaacccgcatcctcaa
tatatgccgtaccagcagggtccttacatgcaaccccagcagcaacagcaaggcccacca
tatccatatcaggcagaccaacagccactgccacaagctgcttacaatcaaggtcaaggt
cagcagccaccgacacctcaagctgcctacaatcaagggcaaggtcagcagccaccaatg
ccacaaccttcctacaatcaaagtcagcagcctgtgataccacaatctggctacaatcaa
ggtcaacagccacaaatgccacacggtgcttataatcaaagtcagcagccgcaaggaatg
aggattcctcagaatcaagtgcaacaccctcaacaatctccgagctttcacccttcccag
actccgcagttgccgcaagtttctcagtctcaaggacttcaaatgccctctcaacaaggc
caactgcagcatggattgcagttctctcagcatggaaaacagccgctgtcacatgggcaa
caaagtccattgttgaaggatgatgatgcaggaggtcatgaaggaaagaggactggattt
tcattaccacttagtcagcagcgtggacaagctcctctttcaagccagcagttaatttct
agccatcaatatcctggagccgttaatcagccaaatatacctggagtcggtgggccatta
tatcctgcaaagcaccttcatggtggatcatctcctgctgagactaataacatgggttta
atgaactcgcctgctcagatgcatcaaggtgcagttccaaatcatattggtccatctcca
gttcgtcctccaatgggtttcgagatgggtaatagggatggtcactttgaaagagatgac
cctcactcttatggaagattcgatggggcaaatactttccagcagcagccaaagcttgct
gccgtcccaccttcacaaaaccccttgggcatgcgaaatgggccaccttatcctcgggca
gacaattttggtggttataacatggcacctccacattcagtgccaaatccacataatcat
ggtccattgcctatgggagcttctgcgaggccgccatctaaaatgtttggtcccccagat
ttcccgggcatatcttcagctgatgcataccgtcaacaccatgaagtcactgccatgggt
gagaatgttcctgctccatttatgacatttgaggctgctggattcccactggagatcctg
agagagatccacgcagctggtttttcaaatcccactccaattcaagctcaaacatggcct
gttgcactgcaaaaccgggacatagtagctattgccaagacagggtctggaaagacactg
ggatacctaattccagcttttatgcatttgaggaggtgccacaacaatccgatgttgggt
cctacagtgttggttttggcccctacacgtgagcttgcttcacaaatacaagacgaagta
gtcaagtttggtcgatcatctagagtctcctgcacatgcctatatggtggagcttcaaag
ggtcctcagctaagagaacttgagcgtggagcagatattgtggtagcaacaccaggacgt
cttaatgatatcctggagatgaagaagattagcctccatcaggtttcattacttgtgctt
gatgaagctgaccgtatgcttgacatgggttttgagccacagatacggaagattgtggat
gagattcctcgtactagacagactctgatgtacactgccacttggcccaaggaggttaca
aaaatagctggggatttactgagagatcctgtacaggtcaacattggcagcatcgatgaa
cttgttgctaacaaatccatcactcagtatgtagaggtggttccacctatggacaagcag
cgacgcctagagcagatccttagagatcaagagaggggttcaaaaatcatcatattctgc
gcaactaagaaaatgtgtgatcagcttgctcgtggcattggtcgcagttttaatgctgtg
agcattcatggtgataagtcgcaggttgaaagagacaatgttctcaatcagtttcgaact
ggcagggctccaatattagttgccacagatgttgctgctcgtggactcgatatcaaagat
atcagagtggttatcaattatgacttcccaactgggatagaggactatgtgcatcgcatt
gggcgtacaggaagagctggggcaactggagtctcatacacgttcttctctgaacaggat
tggaaatatgcaggtgatttggtgaaactcttggaaggtgctaaccagcatgttcctcca
cagctgctggatatggctgcacgaggtgctactggaggtctaagaaatcaggctgcagga
atgagccgctgggatgggcctggtggtggtcgttttgatccaggtattggtggtcctgtt
ggttatggtggagttagggagggccctggaggctttggcggtcatgagggccctggagga
tttggcagtcgtgagggcccaggtggatttggtgttcatgagggcccaggcggatttggt
ggccggggtggccctgatggttttagtggccgggagggtcctggtgggtttggtggcaca
gagggtcctggtggctttggtggcagaaagggcccaggtggcttcagtggacgggatggc
cctgggtccggtggttttggaggtagaggggggcgtggatctggtggttttggcggtaga
ggtggaacaagccctggtggctttggcggtcgtggtggcaggggtgattctcctggtttt
ggtgggcgtggcaggggcgattctcctggttttggtgggcgtggtaggggtgactttggg
cgtggtaggggtgattctcccggttttggtggacgaggtaggggagatttctctggtgga
cgtggtggaaggggtcgtggatttggcgggaggggacgttctgatcgaggcccacatgac
cggtacatctcagatggacggggaagatatgataaccgtcggggatttggcgacaagggt
aaggatcggagctacagccgcagcccgggtagaggccgatcacgaggctatgacagaagt
ggtagcaggagccttagtaggagcagaagccgcagcaggagctggtcacgtagcaggagc
tggagccgtagtcggagccgcagcagcagtcggagtcgcagcaggagcaggagccgtgac
catggtgcagcaccggaacgcaggccccgagcaagatccggattcgatgtgctcccacca
gcagctggagcagcagctggacctgttttaaccggacctgtacctgtatctgtccctgta
tctggaccagcagtatctcctgttccttcactcgcacatgcacagtcactcactgataca
tctgcaatgtcgccaatgtcacccggtggactggtccagcaggctgctgcaccattaaac
agcatgaatgatggtaattttagtggtccacaagctggccaacctttccatggaactgac
gctgcaatacccagttttcctgctgccgaaacatttcctcgctctgcaattcagcaggca
actcctgatgtgcaatga
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integrated database retrieval system
