Panicum virgatum (switchgrass): 120662016
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Entry
120662016 CDS
T07260
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120662016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120662016
Spliceosome [BR:
pvir03041
]
Complex A
Other components
Complex A specific factors
120662016
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
KH_12
zf-CCHC
RRM_5
eIF3g
RRM_10
PHD_4
KH_PNO1_2nd
DUF6319
RRM_7
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
120662016
NCBI-ProteinID:
XP_039797002
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Position
2N:complement(67421341..67425442)
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AA seq
730 aa
AA seq
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MASAETLAPSPSREPSSDPPRAVSSEPPRDPSSEPHGNGDGSGAGAGDSSRRRRRSRWEQ
SNDDSAANNSGGEGGSGARKRKTRWAEEEPRPAIALPDFMKDFAAEMDPEVHALNARLLE
ISRLLQSGLPLDDRPEGARSPSPEPVYDNLGIRINTREYRARERLNRERQEIISQLIRRN
PAFKPPSDYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGS
VKEGKLLQKRDLKPDPSENEDLHVLVEAETQEALDAAAGMVEKLLTPVDEVLNEHKRQQL
RELAALNGTIRDDEFCRTCGEPGHRQYACPNKMSTFKSDVQCKICGDGGHPTIDCPVKGT
AGKKMDDEYQNFLAELGGGSAPESMTKSGGPMLALTGGGGSGSASAGSGNNPPWSAAGGG
GAAATGANGIKKDYDETNLYIGYLPPTMDDAGLISLFSQFGDIVMAKVIKDRNTGHSKGY
GFVKYSDVSQANAAIAAMNGHHLEGRVIAVRVAGKPPQSAPAVSAPPSYPPTDRASGGYS
SQSYMGAPPPPPGSYAPVPWGHPPPYASFPPPPPGSSIYNPALPAPGQTAPLPYGVQYPP
PPPPPAAPIPPPGTAPSGDGAQNYPPGVTPPSSGAPTHAAPTPVYASSSASNAPPMYPPP
PYSYSPYYPTFQPPPPPPPASVDPSQSIATAPWATHSTVPPPPPPLSSTTDQPTSYGADA
EYDKFMSEIK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgccgaaaccctagctccctccccctcgcgcgagccctcctccgacccgccc
cgggccgtctcgtcagagcccccgcgcgacccctcctccgaaccgcacggcaacggcgac
ggctccggcgcgggcgcgggggactcctcccgccgccgccgccgcagccgctgggaacag
tccaacgacgactccgccgccaacaactccggcggtgagggcgggtccggggcgcggaag
cgcaagacaaggtgggccgaggaggagccgcgcccggccatcgccctgccggacttcatg
aaggactttgccgccgagatggatcccgaggttcacgccctcaacgcgcgcctcctcgag
atctcgcgcctgctgcagtcgggtctcccactcgacgaccgccccgagggcgcgcgctcg
ccgtcgcccgagcccgtctacgacaatctcggcatacgcatcaacacccgcgagtaccgc
gcccgggagcgtctcaaccgcgagaggcaggagatcatctcccagctcatccgccgcaac
cccgccttcaagcccccctccgattaccgcccacccaagctccagaagaagctctacatc
cccatgaaggagtacccagggtacaatttcattgggctcatcattggcccgcggggcaac
acgcagaagcggatggagaaggagactggtgcgaagatcgtcatcaggggaaagggtagt
gtcaaagaagggaagctattgcagaagagggatctcaagccagatcccagcgagaatgag
gacctccatgtgcttgttgaggcagagactcaggaggcgttggatgcagctgctgggatg
gtggagaagctgctaaccccggtcgatgaggtgctgaacgagcacaagcggcagcaactc
cgagagcttgcggcgctcaatgggacaattagggacgatgagttttgtaggacatgtggg
gagcctggtcacaggcagtatgcttgccccaataagatgtccacgtttaagagtgatgtg
cagtgcaagatctgtggtgatggtgggcacccgacaattgattgtccagtcaagggaaca
gcggggaagaagatggatgatgaatatcagaatttcctggctgagcttggtggtgggagt
gcacccgagtccatgacaaaatctggtggtccgatgttggctcttacaggaggtggtggt
agtggtagtgcttctgctggtagtgggaataacccgccttggtctgctgcaggtggtggt
ggtgcggctgccactggggccaatggtatcaagaaggactatgacgagacaaatctgtat
atcgggtacttgccacctacaatggatgatgcagggttgatcagtctgttttcacaattt
ggggatattgtcatggctaaggtgatcaaggatcgaaacactgggcatagcaaaggatat
ggatttgtgaagtattcagatgtctcacaggctaatgctgcgattgctgcaatgaatggt
caccatcttgaaggtagagttattgcagttagagttgcaggcaagcctccacagtcagca
ccggcagtttcagcaccaccgtcatatcctcctacagatcgtgcttctggtggctattcc
tcccaatcctacatgggggcacctcctcctcctccagggagttatgctccagttccatgg
gggcacccaccaccatatgcttcatttcctccgccgccaccaggctctagcatatacaat
cctgcactccctgcaccaggtcagacagccccacttccatatggtgtgcagtatcctcct
cccccaccacccccagcagctccaatccctccaccaggcactgctccatcaggtgatgga
gctcagaattatcctcctggtgtaacaccaccgagttctggagcacccactcacgctgcc
ccaactccagtatatgcatcctccagcgcatcaaatgcaccaccaatgtaccctccacca
ccttatagttattctccatactatcctacatttcagccaccacctccaccaccaccagct
agtgttgatccctctcagagtattgcaactgcaccttgggccacccacagtacagtgccg
ccacctccaccacctttgtcctccaccaccgaccagccaacttcctatggtgctgatgca
gagtatgacaagtttatgtcagagataaagtga
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