Panicum virgatum (switchgrass): 120662031
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Entry
120662031 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 57-like
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120662031
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120662031
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
Helicases
120662031
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120662031
NCBI-ProteinID:
XP_039797024
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Position
2N:67532827..67537080
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AA seq
540 aa
AA seq
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MENSKLSSALFAGTHFNRKRFAADFARFHQGPTPSPAAPCAPSPEKKRKRKSGKAKAKKN
QKKRAEAAIASSSDAVEGFNVFKGLTGRNDELRSEKVETGRDEDSVAVRRRKEIEREIER
AAVLRKRFDIHIAGQNVPAPLESFEELISRYGCDSYLVGNLSKLGFHEPTPIQRQAIPIL
LSGRECFACAPTGSGKTLAFLFPLLMKIKPGSKGGVKAVILCPTRELAAQTVRECKKLAK
GRKYYIKLMTKDLSKSGNFKDTHCDILVSTPLRLDHAVKKRDLDLSSVEYLVLDESDKLF
ELGFVEVIDSVVEVCSNPSVIRSLFSATLPDSIEALARTIMHDAIRIIVGRKNSASSLIK
QKLIFAGTERGKLLALRQSFQESLNPPVLIFVQSKERAKELYKELAFEDVRADVIHADLN
EQQRQDAVDNLRAGRTWILIATEVIARGMDFKGVNCVINYDFPESAAAYIHRIGRSGRAG
RSGEAITFFTEEDKPFLRNIANVLVSSGCEVPSWIMALPKLKRKKHRVDRDPILTIPDED
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggagaactcgaagctctcgtcggcgctcttcgcgggcacccacttcaaccgcaagcgc
ttcgccgccgactttgcgcggttccatcagggcccgactccctcacccgccgccccctgc
gccccgtccccggagaagaagcggaagcgcaagagcggcaaggcgaaggcgaagaagaat
cagaagaagcgagcggaagcggctatcgcctcgtcgtcggatgctgtggaggggttcaat
gtgttcaagggattgacgggtagaaatgatgagctgcgttctgagaaggtggagacaggg
agggatgaggattcagtggctgtgaggcggcggaaggagattgagagggaaatcgagagg
gctgcagttcttaggaagaggtttgacattcacattgctggacaaaatgttccagcacca
cttgagagctttgaagaactgatttcaaggtatggttgtgattcctatctggttgggaac
ttgtcaaaacttgggtttcatgaacctacaccgatacaaaggcaggccattcctattctt
ctttcagggagggaatgctttgcttgtgcacctactggttctggcaagacactagctttc
ttgtttccacttcttatgaaaattaagccagggtctaaaggtggtgttaaagctgtgatt
ctttgcccaacgagggaattagccgcacaaactgtgagagaatgcaagaagttagctaaa
ggaagaaagtactatattaaattgatgaccaaagatctctccaaatcagggaatttcaaa
gatacgcactgtgatatccttgtttccaccccacttcgtttggaccatgctgtaaagaaa
agagaccttgatttaagtagcgtggaataccttgtcttggatgaatctgataaacttttt
gagcttggatttgttgaagtgattgattcagttgttgaagtctgttccaatccttcagta
attcggtctctgttcagtgccacattgcctgattcaattgaggctcttgcacgcactata
atgcatgatgccattcgaatcattgttggaagaaaaaattcagcctcctcactgattaag
caaaagttgatttttgctggaactgagagggggaaattgttagctcttcgccaaagcttt
caagagtctctcaatccaccagtattgatctttgttcaaagcaaagagagggcaaaagag
ctttacaaagaactggcatttgaagacgttagggctgatgtgattcatgcagacctcaat
gagcagcagcgtcaggatgctgttgacaacttgagagctggaaggacctggatactgata
gcaacagaagtcattgctcggggaatggatttcaaaggtgtaaactgcgtgataaactac
gattttccggagtcagctgctgcctatattcacaggataggacgatctggaagagccggc
agatctggggaggccatcacattcttcacagaggaggacaagccattcttgaggaatatc
gcgaatgtgctggtatcttcaggttgtgaagttccttcctggataatggcgttgccgaag
ctcaagcgaaagaaacacagggtggatagggacccgatcttgaccataccagatgaagat
tga
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