KEGG   Panicum virgatum (switchgrass): 120662058
Entry
120662058         CDS       T07260                                 
Name
(RefSeq) protein transport protein SEC31 homolog B-like isoform X1
  KO
K14005  protein transport protein SEC31
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120662058
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120662058
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pvir02044]
    120662058
Membrane trafficking [BR:pvir04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    120662058
Secretion system [BR:pvir02044]
 Sec (secretion) system
  Eukaryotic Sec-SRP protein
   120662058
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40 Beta-prop_RIG_2nd TPR_Sec16 Beta-prop_EIPR1 Beta-prop_EML WDR55 Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd TPR_GEMI5 Beta-prop_IFT140_1st EIF3I Beta-prop_WDR19_1st SRA1 MIOS_WD40 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Prp18
Other DBs
NCBI-GeneID: 120662058
NCBI-ProteinID: XP_039797067
LinkDB
Position
2N:67755106..67764582
AA seq 1128 aa
MACIKSAQRAALTALAPDAPYLAAGTMSGAVDMSFSASANIEIFRLDFQSDSPDLPLLAS
APSPDRFNRLSWSRPSAVEGDSYELGLLAGGLSDGSVAVWNPLIMISSEGKAEDAMVARL
EKHTGPVCGLEFSELTPNRLASGAEQGELCIWDLKNPVEPTVYPPLKQSVGSSAQAEISC
LSWNPKFQHIVATTSSNGMTVVWDLRNQKPLTSFSDSVRRKSSVLQWNPDMSTQLIVASD
DDSSPSLRVWDVRKTISPVREFVGHSKGVIAMSWCPYDSSFLLTCSKDNRTICWDTVSGE
IISELPTSDNWNFDLHWYRKIPGVIAASSFDGKIGIYNLEFSGLYAAGDAGAPARPRAPA
PKWLKCPTGASFGFGGKLVAFHPAAPTQGAQVSSSEVHVHNLVIEQSLVSRSTEFEAAIQ
NGDKSSLRALCEKKSQESLSDEERETWGFLRVMFEDGDVARTKLLAHLGFEPPQAPTVDA
TDELSQTLADTLNLDHGTTTDNADAQFLVDNGDDFFNNPQPSEASLAEESISTNGEQIEQ
EMPGDVVPSDPSIDKSIQHALVVGDYKGAVNQCLAANRMADALVIAHAGGSALWESTRNQ
YLRKSISPYLKVVSAMVGNDLMSFVSTWPLSSWKETLALLCTFARKEEWNVLCDTLASRL
LSVGDTLAATLCYICAGNIDKAVEIWSRNLKSEDGGKAYVDLLQDLMEKTITLALATGHK
RFSASLSKLVENYAELLANQGLLKTAMEYLKLLGSDEHSHELAILRDRIAFSTEENDAAR
SSVSDSTGAGTPYFANQNYITPDHSQNLYQQVQSYNVPSNTYSDGYQQQPNATFAYSDAY
QPTQPAQMFVPSSTPISSQQPQGSAPIPVPPQTVTTFTPANPMSLKNAEQYHQPNTLGSQ
LYTGAANQPYSTASSTPYQSGPPPTFKPVQYQTTPVPFVGPTASVPGTVPNQMLPHSATA
TNSTSRFMPSNNQGFVQRPGLSSAQPSSPTQSPAQAPAQPAPPAPPPTVQTADTSKVSAE
LRPVIATLTRLFDETSKAPGGSQATQAKKREIEDNSRKIGALFAKLNSGDISPNVSSKLI
QLCSALDSSDFATAMHLQVILTTSDWDECNFWLAALKRMIKTRQNFRM
NT seq 3387 nt   +upstreamnt  +downstreamnt
atggcgtgcatcaagagcgcgcagcgggcggcgctgacggcgctggcgccggacgcgccg
tacctcgccgccggcaccatgagcggagccgtcgacatgagcttctccgcgtccgccaac
atcgagatcttccgcctcgacttccagtccgactccccggacctcccgctcctcgcctcc
gcgccctcccccgaccgcttcaaccgcctctcctggtcgcggccgagcgccgtggagggc
gactcctacgagctgggcctccttgcgggaggcctcagcgacggctccgtcgccgtgtgg
aacccgctgatcatgatcagctccgagggcaaagcggaggacgccatggtcgcgcggctc
gagaagcacaccggaccggtttgtgggttggagtttagcgagctcacgccgaatcggctc
gcttcaggggctgagcagggggagctctgcatctgggatctcaagaacccagtcgagcca
actgtttacccgccactcaagcagagtgttggttccagtgcacaagctgaaatctcttgt
ttatcctggaatcccaagtttcaacatatagtagcaaccacttctagtaatggaatgaca
gttgtttgggatttaaggaaccagaaaccactgactagcttttcagattctgttagaagg
aaatcctctgttcttcaatggaacccagacatgtccacccaactgattgttgcatcagat
gatgacagctcaccatctctgagagtttgggatgtgaggaagaccatttcaccagtaaga
gaattcgttggccattcaaaaggtgtaattgctatgtcctggtgcccttatgatagttcg
ttcttgcttacatgttccaaagacaatagaacaatatgttgggatactgtcagtggagag
attattagtgagctaccaacgagcgataattggaattttgaccttcactggtatcggaaa
ataccaggcgtcatagcagcatcctcatttgatgggaaaattggcatatacaacctagag
ttctctggactttatgcagctggtgatgcaggtgccccagcacgtccaagagcgccagct
ccaaaatggttgaaatgccccactggtgcatcttttggctttggtggtaaacttgttgct
ttccatccggcggcacccacccaaggcgcccaagtatcttcttctgaggtgcatgtgcac
aatttggtgattgagcaaagtctggtcagccggtcaactgaatttgaagctgctatacag
aatggtgacaagagttcgctacgtgctctgtgtgaaaaaaaatcacaagaatcattatct
gatgaggaaagagaaacatggggcttcttaagggttatgtttgaggatggggatgttgca
aggacaaaattgcttgctcatcttggcttcgaacctcctcaggcaccaactgtggatgca
actgacgaactgagccaaacattggcggatacacttaaccttgatcacggcacaacaact
gataatgcagatgctcaatttctcgttgataacggggatgattttttcaataatcctcaa
ccttcagaggctagcttagctgaagaatcaatttctacaaatggtgaacagatagagcag
gaaatgcctggagatgttgtgccatctgatccatcaattgacaagagcattcaacatgca
ttggtggttggagactacaaaggtgcagttaaccagtgccttgctgcaaatcgtatggct
gatgctttggttattgcccatgctggtggttctgctctatgggaaagcacaagaaatcag
tatcttaggaagagtatctcgccctacttaaaggttgtttctgctatggtgggcaatgat
ttaatgagtttcgtgagtacttggcccctaagttcgtggaaagaaactcttgcgctactg
tgcacgtttgcgcggaaagaggaatggaatgttttgtgtgacacacttgcatctagactc
cttagtgttggagatacactagctgcaactctttgttacatctgtgctggaaatattgac
aaagctgtggaaatatggtctcgcaacttgaagtctgaagatggtgggaaggcttatgtt
gatcttctccaggatttgatggaaaagaccattactctcgcccttgctacaggccacaag
agattcagcgcatcgctatctaagcttgttgagaactacgctgaactgttggccaatcaa
ggtcttcttaagactgcaatggagtatttgaaactgctgggatcagatgaacattcacat
gagctggcgattttgagagatagaattgcattttccacagaagagaatgatgctgctagg
agctctgtttctgatagcactggtgccggtaccccatatttcgctaatcagaattatatc
accccagaccattctcagaatctttaccagcaggtacaatcatataatgttccaagtaac
acatattcagatggttaccagcaacaacctaatgcaacctttgcatacagcgatgcatac
caacctacacaaccagcccaaatgtttgttccatcaagtacacccatcagctctcagcaa
ccacaaggttctgctcccatacctgtgccgccgcaaacagtaacgacatttactcctgca
aacccaatgagtctaaaaaatgcagaacaatatcatcaacctaataccttgggctcccag
ctttacacgggtgctgcaaaccagccatattctactgcatcatctactccgtatcaaagc
ggacctccacccacattcaaacctgttcaataccagactacaccagtcccttttgttggt
cctacggcctctgtaccaggaacggtccctaaccagatgcttccccattctgccactgca
actaactcaacatccaggtttatgccatcaaacaatcaaggctttgttcagaggccaggt
ttgagttcggcccagccctcaagtccaacacagtcaccggcacaggcaccggcacagcca
gctcctcctgcacctcccccgaccgtgcagacagctgatacatctaaggtttctgctgaa
ctgagacctgttattgcaacactgaccagactatttgacgagacatccaaagcccccggg
ggatcacaagctactcaagcaaagaagcgtgaaattgaagacaattcaaggaaaataggg
gcattgtttgcgaaactaaatagtggtgacatatctccaaatgtttcatctaaactcatt
cagctgtgcagtgcacttgatagtagtgattttgctactgccatgcacctccaggtaatc
ttgacaacaagtgactgggatgagtgcaacttttggcttgcggcattgaagcgtatgatc
aagacacgacagaacttcagaatgtaa

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