Panicum virgatum (switchgrass): 120662085
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Entry
120662085 CDS
T07260
Name
(RefSeq) protein CHROMATIN REMODELING 5-like isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120662085
03036 Chromosome and associated proteins [BR:
pvir03036
]
120662085
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120662085
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
120662085
SLIK complex
120662085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_Hrp3
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
120662085
NCBI-ProteinID:
XP_039797108
LinkDB
All DBs
Position
2N:complement(68006526..68029994)
Genome browser
AA seq
1724 aa
AA seq
DB search
MAFFSNSGSRADSGGYNLNEKADDEGAYESVRDGGVDSNSRQWNLNEKAEDAYHSEPEQF
EAGQSSLYSSENTFGQHARRVGGPWGTNFLKDSRSNQTAKEVLSNRGMDAASLLDDIDGS
GDDDELNRANGDVPAEEMLSDDYYEQDGEEQIESLHRGGTKQSSCSTSGAAMKSASRQKK
TKTKYNSYADDDDDEYNDENDDDDDADEDDPDDVDFEPDSETDKAVDKDKFMDSENSDGD
NDDELELSDDEDDDFAENRRQPKRLKVVATKTSKGRKLPMQAQRRRGMSHTDDEYSSGKE
SDVPSDADYHRSKKPDRLHQKPVGRNDVAPLNSHNEIRTSGRRRTVKKISYAESEESDDS
EEKSTKQQKLKEEPEEEDGETIERVLWHQPKGVAEEAMRNDQSTQPTVVSLPSDFNQQWD
ELEFYIKWKGQSYLHCQWKTLSELQSVSGFKKVLNYTKRVAEEQRYKRALSREEVEVHDV
GKEMELDLIKQYSQVERIFADRVSKADGDDLVPEYLVKWQGLPYAESTWEKDTDIEFAQD
AIDEYKAREAATAILGKTVDFQRKKSKASLRRLDDQPEWLKGGKLRDYQLEGLNFLVNGW
RNDTNVILADEMGLGKTIQSVSMLGFLHNAQEINGPFLVVVPLSTLSNWAKEFRKWLPNM
NVVIYVGNRASREMCQQYEFFSDKKGGRHVKFHTLITTYEVILKDKAVLSKIKWNYLMVD
EAHRLKNCEASLYTTLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPVKFNSKDSFVEK
YKNLSSFNETELANLHKELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILE
RNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSIGDRNKVERIVMSSG
KLVLLDKLLVRLRETNHRVLIFSQMVKMLDILAEYLSLRGFQFQRLDGSTRADLRHQAME
HFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVN
IYRFVTCKSVEENILERAKKKMVLDHLVIQKLNAEGRLEKKESKKGGSMFDKNELSAILR
FGAEELFKEDKTDEETKRNLESLDIDEILERAEKVETKGGEGEEGNELLSAFKVANFSSG
EDDATFWSRLIQPDPADMVQETLAPRAARSKKSYVEDPQLDKNNNNRKRRAVEAQEKPRR
RSGRTVETAVSLPLVDGAVAQVREWSFGSIPKKDASRFVRAVKKFGNATQIDSIVDDVGG
VLAKAPHEAQIELFDLLIDGCQEAVKENTDIKGTVLDFFGVPVKPYELLDRVEELQFLAK
RIARYKDPIKQYRIQLPYKKPQWSASCGWTETDDARLMVGIHWYGYGNWEKIRLDPKLGL
TTKIAPATLGERETFLPRAPNLDNRASALLQKEYAKFSGKSSKAKGGSRQTVNNDSSGTR
PMRSRQKDAQEKDDNKSNKDDIQKRKIVEAEAREEGEISESEAETKYRLDKEEKWLEWCS
EVLDEEQETLKRLDRLQNTSVNLPKEKVLSRIRKYLQIIGDKIGEVVRQHSESYRQSRKS
SRSSRMTMRLWNYVATFSNMSGEQLHDLYLKLSQDLEGGVGPSHGGNFASIPPTKGGNSN
QLHPSRNQRPTRSLQYTSESFHNSDNSGSSEAWKRRRRADPDNQFDTQPLYQPPPMMTNG
NRLQESSAAGILGWGPVEMRRYGNERPKRGVHPSHFPAGHGPLL
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atggcattcttcagcaactctggaagcagggctgattcgggagggtacaacttgaatgag
aaggctgatgacgagggcgcctacgagtcagtcagggatgggggtgttgactcgaactct
aggcagtggaacttaaatgagaaagcagaggatgcctaccacagtgaaccagagcaattt
gaagctggccagtcaagtctgtactcttctgagaacacatttggccagcatgcccggaga
gtgggcggtccatggggtacaaactttctgaaggattccaggtccaatcagacagccaaa
gaagttctgtcgaataggggaatggatgctgctagcttgcttgatgacattgatggtagt
ggggatgatgatgagctgaacagagcaaatggggatgtgcctgctgaggaaatgctttct
gatgactattacgagcaggatggagaggagcagattgaatcattgcatcgtggcgggacg
aagcagtcaagctgctccacttctggtgcagcaatgaagtctgcttcgcgacaaaaaaag
acgaagacaaagtacaattcttatgctgacgatgatgacgatgagtataatgatgagaat
gacgacgacgacgatgcagatgaagatgatcccgatgacgtggattttgagccagacagt
gaaacggacaaggctgttgataaggataagtttatggatagtgagaattctgatggcgac
aatgatgatgagcttgagctctcagatgatgaagatgatgattttgctgagaaccggagg
caacctaaacggcttaaggttgtagcaactaaaacttccaagggaagaaagttgcctatg
caggctcaacgaaggcgtgggatgtctcacaccgatgacgaatattcctcaggaaaagag
tcagatgttcccagcgatgctgattatcacagatcaaaaaaacctgacagattgcatcag
aaacctgtgggccgcaatgatgttgccccgctcaattctcataatgagattcgaacttct
ggaaggaggaggacagtaaagaagatctcgtatgctgaaagtgaagaaagtgatgatagt
gaggagaagtcaactaaacaacagaagcttaaggaggaaccagaagaggaagacggtgaa
acaatcgaaagagttctttggcatcaacccaagggtgtcgcggaagaggcaatgaggaac
gaccaatcgactcaacctactgttgtcagcctaccatcagactttaatcaacagtgggat
gaactagagttctacataaaatggaaagggcagtcttacctgcattgtcaatggaagaca
ttatcggagctccaaagtgttagtggatttaagaaggtattgaattacacaaaaagagtt
gctgaggaacagaggtacaagagggcactttcacgtgaggaggttgaggtacatgatgtg
ggcaaggagatggagctggatcttattaagcaatatagtcaggttgaacggatatttgct
gatagggtcagtaaagctgatggagatgatctggttccggaatatttagtcaaatggcaa
ggccttccatatgcagaatctacctgggaaaaagatactgatattgaatttgctcaagat
gcaattgatgaatataaggcccgtgaagctgccacagctatacttgggaaaactgtggat
ttccaaaggaagaaaagcaaagctagtttgaggaggcttgatgaccaaccagaatggcta
aaaggtggtaaacttcgtgattatcagcttgaaggactaaactttctcgtcaatgggtgg
agaaacgacactaatgttatacttgctgatgaaatgggtctgggaaaaactatccaatct
gtttccatgcttggctttcttcataatgctcaagagatcaatggaccgtttcttgtagtt
gtgccactgtctacattgtcgaattgggcaaaggaatttcggaagtggctgcccaacatg
aacgttgtgatttatgttggaaaccgtgccagcagagagatgtgccagcagtatgaattt
ttttcagacaagaagggtggacggcatgtaaaattccacacgttgataactacatatgag
gtgattctcaaggacaaagctgttctttccaagatcaaatggaactatcttatggttgat
gaagcccaccggttaaaaaattgtgaagcatcactgtatactacccttttggaattcagc
actaagaataagctgcttatcacgggaacacctttgcagaacagtgtcgaagagctttgg
gcattacttcatttccttgatccagtcaaattcaacagcaaggatagttttgttgagaaa
tacaaaaatttgagttccttcaatgaaactgagctggcgaatctgcacaaggaattgagg
cctcacattctaagacgagttataaaagatgttgagaagtctttacctcctaaaattgag
cggattctacgtgtcgagatgtcaccccttcagaaacagtactacaagtggattttggag
cggaattttcagaatctgaataaaggagtccggggcaatcaggtctcacttttgaacatt
gttgttgaattgaagaaatgctgcaaccatccattcttgttcgaaagtgctgatcatggt
tatggtggagatagcattggcgatcgaaataaagttgaacgcattgttatgagtagcggg
aaacttgttttgttggacaaattattggtgagactacgggagactaaccatcgtgtgctt
atattctcacagatggttaagatgttggacatccttgcggaatacctctctctccgggga
ttccagtttcagaggcttgatggtagtacaagagcagaccttcgtcaccaagccatggaa
catttcaatgctcctggaagtgatgacttctgttttcttttatccacacgtgccggagga
cttggtattaatcttgcaactgcagatacagtgataatttttgattcagattggaatcct
caaaatgatttgcaggcaatgagtagggcacataggattggtcaacaagagactgttaac
atctaccgtttcgtcacgtgcaaaagcgtggaagagaatatattggaacgcgcaaagaaa
aagatggttcttgatcacttggtgattcagaaactaaatgctgaaggcagacttgagaag
aaagaatccaaaaagggtggctccatgtttgacaagaatgaactttcagctatattgagg
tttggggcagaggagttgttcaaagaagacaagactgatgaagagaccaagaggaacctt
gaaagtttggacattgatgaaattcttgagagagctgagaaagttgaaacgaagggtggt
gaaggggaggaaggaaatgagcttcttagcgctttcaaggtggctaacttttccagtggt
gaagatgatgccacattctggagtagactaatacagccagatcctgcagatatggttcag
gaaactttggcaccgcgtgctgcacgaagtaaaaagagctatgttgaagatcctcaactt
gacaaaaataataataacaggaaaaggcgggcagttgaggcacaagaaaagcctaggagg
cgttctggcagaacagtggaaacagctgtttcattaccattggttgatggggctgtagct
caagtacgagagtggtcttttggcagtattccaaagaaggacgcttcccgttttgtacga
gcggtaaaaaaatttgggaatgcaacccagattgactcaattgtggatgatgttggtggt
gtattagcgaaggcaccacatgaagcacaaatagagctgtttgatttgctgattgatggt
tgccaggaggcagttaaagagaatacagatatcaagggcacagttttggattttttcggt
gtacctgtgaagccctacgaattgctggatcgtgttgaagagcttcagttcttggcaaag
agaattgcacgttacaaagatccaatcaagcaatatcggatccagttaccttacaaaaag
cctcagtggtccgcaagctgtggatggactgaaactgatgatgctagattgatggttgga
attcattggtatggctacggtaattgggagaaaatacggttggatccaaagcttggcctg
acaacaaaaattgcaccagcaacacttggtgaaagagagacatttttaccacgtgctcca
aacttggataatcgtgctagtgctctcctgcaaaaggaatatgccaagtttagtggtaag
agctcaaaagccaaaggaggttcccgccagacagtcaataacgacagtagtggaactcga
ccaatgagaagccggcaaaaggatgcacaagaaaaggacgataataagtcaaacaaagac
gacatccagaagcgcaagatagtggaagctgaagcaagagaagaaggtgaaatttctgaa
tcagaggcggagacaaagtatcgtctggacaaggaggaaaagtggcttgaatggtgctct
gaagttttagatgaggagcaggaaactttgaagcgcttggataggctacagaatacaagc
gtaaacctcccaaaggaaaaggttctttcgagaattcgcaagtacctccagataattggg
gacaaaattggggaggttgtccggcaacacagcgagtcttataggcaatcccgtaagtct
agtcgctcctcccgtatgaccatgaggttatggaattatgttgcaaccttttcaaatatg
tcaggggaacagctgcatgatctctatttgaaacttagtcaagacctggaaggtggagtt
ggcccatcccatggtggtaatttcgcatcaattcctcccactaagggaggtaactcaaat
cagcttcatccttcgagaaaccaaaggccaaccaggtctctccagtacacttctgagtct
ttccataatagtgataactctggaagttctgaagcctggaagcgtcgacggagagctgac
ccagataaccaatttgacactcagcctttgtaccaacctcccccaatgatgactaatgga
aataggttgcaggaatctagtgctgctggtattcttggctggggtccagttgaaatgaga
cggtatggtaatgaaaggccaaaacggggtgttcatcctagtcatttccctgctgggcat
ggtcctttgctgtag
DBGET
integrated database retrieval system
