Panicum virgatum (switchgrass): 120662191
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Entry
120662191 CDS
T07260
Name
(RefSeq) probable ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120662191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120662191
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120662191
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
120662191
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
120662191
DNA repair and recombination proteins [BR:
pvir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
120662191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Motif
Other DBs
NCBI-GeneID:
120662191
NCBI-ProteinID:
XP_039797248
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All DBs
Position
2N:69137942..69146250
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AA seq
893 aa
AA seq
DB search
MEAALKGYFGYSSFRPYQREIIQKVLDGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVS
PLLSLMQDQVMSLKQKGVKSEYLGSTQTNSSASSEAEKGMFDVLYMTPEKAISLSSRFWN
NLQAAGICLLAVDEAHCISEWGHDFRMEYKELHLLRDLLVGVPFVALTATATERVRRDIS
TSLVLCDPHVVVGSFDRHNLFYGVKSCNRSISFINELVKDVSKRNAAGESTIVYCTTIRE
TEQVHDALVTAGIKSGIYHGKMGSRAREESHRSFIRDEVRVMVATIAFGMGIDKPDVRCV
IHYGCPKSLESYYQESGRCGRDGLSSVCWLYYQRSDVTKVDFYCADAKNGTQRKAIIDSF
MAAQKYCLLATCRRRFLLQYFGEELNSDCGNCDNCTAVKNVRDLSKETFLLLSCIKSCGG
RWGLNLPIDVLRGSRAKKIVENNYDKLQMHGRGKDYSPNWWKALGGLLIAHDYLKETVRD
TFRCVSVSPKGVKFLSAAHRIDGTPLILQLTAEMIDLEEHGSSQHKEGGGSNLVPTLESE
KFSEDESKLYQMLLNVRMELAQNIGTAPYAICGDQTIRNFAKMRPSTGARLANIDGVNQH
FISRFSHTFIQNITQLSKELNLPLDNSPSPPPTINPAVENIAGVPEPVQNNLPGILGDAK
LTAWELWQKQEFSFLKITYFRRAVPIKEQTVIAYILDAAREGCELDWSRFCREVGLTPEI
ASGIRLAISKVGSRDKLKPIKEELPENVTYDMIKTFLTIEGRGLSEQIFSNAPASSHASE
ASENDNPADGVQTADACDANPSAKRGQTDGMLGSAEEPAMKLQKIEEHGVESSGTTSATE
ESVLELVASRDGVLLDDVVKHFNGSKRESVVEILDSLESEFEIYKKNGKYMIM
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcgctgaagggctatttcgggtactcgtcgttccgaccgtaccagagggag
ataatacagaaggtcctggatggacgggattgcctcgtcgtcatggccaccggcagcggc
aaatccatctgctatcaaatacccccactggttacaaagaagacagctgttgttgtaagc
cctcttctgtccctgatgcaagaccaggttatgagtttaaaacaaaaaggtgttaaatct
gagtacctgggcagcacccaaacaaatagctcagccagcagcgaggctgaaaaaggcatg
tttgatgttctgtacatgacaccagagaaagcaatttcactttcttcaaggttttggaat
aacttgcaggctgccggaatatgcttgctggccgttgacgaagcgcattgcatatcagaa
tggggacatgatttcaggatggagtacaaggagttgcatctattgcgtgaccttcttgtg
ggcgttccctttgttgcattaactgccacagccactgaaagggtacgcagagatatttct
acttctttggttctttgcgatcctcacgttgtggttggatcgtttgatcgtcacaacctt
ttctatggtgtcaagtcatgcaatcgatctatatcctttatcaatgaacttgtgaaagat
gtttcaaagaggaatgctgcgggtgagtcaacaatagtgtattgtactaccatccgggag
accgaacaggttcatgatgcattggttactgctggaatcaagtctggaatttaccatggt
aaaatgggcagtagagctagagaggaatcccatagatccttcatcagggatgaagttcgt
gtgatggtggcaactatagcttttgggatgggtattgataagcctgatgttagatgtgta
atacactatggatgtccaaagagcctagagtcctactaccaggaaagtgggcgttgtgga
agagatggtctgtcttcagtctgctggctatattaccaaagaagcgatgttacaaaagtt
gacttttattgtgctgatgcaaaaaatggcacccagaggaaagcaatcatagattccttc
atggcagcacaaaaatattgcctccttgctacgtgccgtagaaggttcttattgcagtat
tttggcgaagagctcaactctgactgtggtaactgtgataactgcacagcagtgaaaaat
gtgagagatttgtcaaaagaaacttttttgttgctgtcgtgcataaaatcttgtggagga
cgctggggcctcaatttacctattgatgttctccgtggatcacgagccaagaaaattgtt
gaaaacaattatgataagctacaaatgcatgggcgaggtaaagactactcaccaaactgg
tggaaagcacttggtggcctccttattgcacatgattacttgaaggagactgtccgtgat
acatttagatgtgtcagtgtcagtccaaaaggggtcaagtttctctctgctgctcataga
atagatggaacaccactgattttacagctgactgcagagatgattgatttagaggaacat
ggtagttcgcagcacaaagaaggtggtggctcaaatcttgtgcccacattagagtctgaa
aaattttctgaggatgaatcaaaactgtatcaaatgctcctcaatgtcaggatggagctt
gctcaaaatatcgggaccgctccatatgccatatgtggtgatcagacaataagaaacttt
gcaaagatgaggccttctactggagctagacttgctaacatcgatggtgtcaaccagcat
tttatctcgcgtttcagtcacacttttatccaaaatatcacacaattgtcgaaggagtta
aaccttccactagataattcaccatcaccaccaccgacaataaatccagctgtagagaat
atagctggtgtgccagaacctgtgcaaaacaatcttcctgggatcttgggtgatgcaaag
ttgactgcatgggaattgtggcagaagcaggagttctcattcctaaaaattacttatttt
cgcagagcagtgccaataaaagagcaaacagttattgcctacatacttgatgctgctcga
gaaggatgtgagttggactggagtcggttttgcagggaggtagggctgacacctgagata
gcctcagggatccgtcttgcaatatcaaaggttggatcacgtgacaagttgaagccaatc
aaagaggagctcccagagaatgtaacttacgacatgatcaagacattcctgacgattgag
ggacgtggattgtcagagcagatttttagtaacgctcctgcttcctcccatgcaagtgaa
gccagcgaaaatgataatccagcagatggtgtccagacggcagatgcctgtgatgcaaac
ccttcagcaaagagaggccaaaccgacggcatgcttggttctgctgaggagccagcaatg
aaactgcagaagatagaggagcatggagttgaatcttctggcacaactagtgccactgaa
gaatctgtactagagcttgtcgccagccgcgatggggtgttattagacgatgttgtcaag
catttcaatggatccaagagagaatcagttgtcgagatattggacagcctcgaatccgaa
ttcgaaatttacaagaaaaatgggaaatacatgatcatgtaa
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