Panicum virgatum (switchgrass): 120662218
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Entry
120662218 CDS
T07260
Name
(RefSeq) nuclear poly(A) polymerase 3-like isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120662218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120662218
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
120662218
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
120662218
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
MTPAP-like_central
PAP_RNA-bind
NTP_transf_2
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
120662218
NCBI-ProteinID:
XP_039797291
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Position
2N:complement(69467473..69472244)
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AA seq
558 aa
AA seq
DB search
MLCLPPRPPRHTLAASATAMPYMAAVGPVPWQPSPALAAAGLLAATSPYGNPEPQTLPFL
PPPPPAILPPRAPIVLQLHPHPGFLAEVDRRRSCSLLQLLKDEGAAPSPEDEKRREQVIR
ELKKIVMHWAKAVACEQSVPQRLATATVLTYGSYSLGAHGPESDIDALCVGPCIATLQYH
FFVVLRQILEGRPEISGVPTIESAKIPLMRFRFSGVAIDFTYAQLPAFDALKAINMFCPR
LLQKIDERSWRSLSGVRVNEKIVQLVPNSEKFQVLLRCVKLWARKRGLHCHHLGFFAGIH
LAILAAYICQRYPNASVNGLFVMFFQTFAHWPWQVPVSLHDEPTDCLHPEGRLMPIVMPC
TPPEFCVSNVTKSTFKKIREELTRGYAFTKDPLRHDFEWTWLFESFPYAEKHQQFLRIAL
CAPTFEELHDWAGWVKSRLRFLILKLERSGIGCDPCPSEEIDHTVKEPNMVFYWGLIPEK
IIHVDTSALKENFMKDVTNDVYGKVKCTRSVLTISVVGLSQLPKSMCTHSVHWQYLQHCM
LGYQARSEDQSAGWLGLA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgctctgccttcctccgcgcccgccgcggcatacgctggcggctagcgcgaccgccatg
ccgtacatggcagccgtggggcccgtcccctggcagccttccccggcactggcggctgcg
gggctcctcgccgcgacctccccatacggcaatcccgagccccaaaccctacccttcttg
ccgccgccgccgcctgcgatccttcctccccgggccccgatcgtcctccagctccacccc
caccccggcttcctcgccgaggtggatcgccgccgcagctgttcccttttgcagctcttg
aaggatgagggggccgccccgtcgccagaggatgaaaagaggagggagcaggtcatccga
gagctcaagaagatagtgatgcattgggccaaggcggtggcgtgtgagcagagtgtgccc
cagaggctagccacggctacggtcttgacatatggttcttactcgttaggggctcacggg
cctgaatctgacattgacgcactttgtgttgggccttgtatcgcaacactgcagtaccat
ttctttgttgttctgagacaaattcttgagggcagaccggaaatatcaggagtgccaact
attgagagtgctaagattccgttgatgcggtttagattctctggtgttgcaattgatttc
acatatgctcagcttcctgcttttgatgcattaaaggctataaatatgttttgccctcgg
ttactacagaaaattgatgaacggagctggaggagtctatctggagttcgtgttaatgag
aaaattgttcagctagtaccaaattctgagaagtttcaggttctgttgcgatgtgtcaaa
ctatgggctaggaagagaggacttcattgtcatcatcttggattctttgccgggattcat
ttagcgatccttgcggcttacatctgtcagagatatccaaacgccagtgtcaatggtttg
ttcgtaatgttctttcagactttcgctcactggccttggcaagttccagtaagtctgcat
gatgagccaactgattgcctgcacccagaggggcgtctcatgcccatagtgatgccttgt
accccgccagagttttgtgtgtcaaatgtgacaaaaagcaccttcaagaaaataagagag
gaacttacacgtggttatgctttcaccaaggatccattgaggcatgattttgagtggact
tggctttttgaatccttcccatatgctgagaaacatcaacaatttctccggattgcttta
tgtgcgccaacatttgaagagctgcatgactgggctggatgggtgaaatctcgcctccgt
ttccttattctgaagttggaaaggtctggcattgggtgtgacccgtgcccctcagaggag
attgatcatacagtcaaggagccaaacatggtcttctactggggcctcatccctgaaaaa
atcattcatgtggacactagcgctctgaaagaaaatttcatgaaagatgtcaccaatgat
gtctacggcaaggtgaaatgcacgcgttcggttttgacaatatctgtggttggtctgtca
cagctgccaaagagtatgtgcacccattctgttcactggcaatacttgcagcactgcatg
ctgggctaccaggctaggagtgaagaccagagtgcaggttggctaggacttgcttag
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