Panicum virgatum (switchgrass): 120662251
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Entry
120662251 CDS
T07260
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120662251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120662251
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
120662251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
120662251
NCBI-ProteinID:
XP_039797354
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All DBs
Position
2N:69808602..69814667
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AA seq
1233 aa
AA seq
DB search
MIKGSTGNHNHPIGAVPFEAFHNGSWHGVNSIGIRDGGLFVKFVCCGSSVEHNIDGDYVR
LHSRKATCLDCSHVLRPGADVCVKQASSRGETKSSVPLYRDARLIKIVKKHYTDQCLCLF
AVIYYKDQCPGSKGKVIAGTIAKVVTIGDVFILQKLQPGELQDRSVQWSSAEDCFHHNRS
KLLSARFSTEVTHLIVLSILKGMEFNIKVVEGRIIYQITKSDQVWCSVDSMSIPPGFGKN
MDIISYKPHDEALRPRIRTVPVIQVNKHNLTEYGCTTEMDELDSAQDVEVLYERVDLRRS
KRLKTQPDRFTSYDAPNFNRTYKKKEDNASSTMNENSESDLSWDSPVQEESGNEEVLGNS
GMKQTAFSPFMVKEDTRSMEGQCKNPMKRTQCSFPVKEKPISVEIEKNTTEQRCSGSHIP
HTPAKNKEKCNRPPLSFQLKPFTSSHSVGGNSEPAFCQKRGRKRKRHMREREYKEMIDQC
IGNIQCEIERDSDFKIGVQILNCSGNAYRKEDFTWPSSTDTQEEKDEFEELWKEMDYALT
SLELLEKKQMPDSEATHETDTDLGKRGELCHHDCILDEQLGLTCRLCNVVCTEAKDIFPP
MFTGKDHERPGRSEFCQHDHVLDPSFLEICAPEFSKFKGSGNVWASITDLEPKLHAHQRK
AFEFIWKNLAGSLHLEEMDDPTESRGGCVVAHTPGAGKTLLLISFLVSYLKVHPRSRPLV
LTPKAAIHTWRREFEKWGISLPLHVLHYSNERGKAMGNLSSKTRVIFKNFRQPSWKMMRM
MDSLDKLCKWHEDPSILLMTYPSFLALTKEDSKMQHRAFMAEVLMNNPGLLILDEGHNPR
SNKSKLRKLLMKVKTEFRILLSGTVFQNNFGEYFNTLALARPRFVNDVMTALVPEAEREA
HKRTGKHQEALARRIFVEKVGQKIESSSIDDRVDGISVLNKLTRGFIDSFEGTEQNNLPG
IRVYTLFMKPTDIQEEVLAKVTMPVPGDARYPLEVELLITIASIHPWLIKTTKCASTYFT
LEEVARVEKYKWTYDVGCKSKFVMDLLHKSSFRGERVLIFCHNVSPINFLVKLIEIAFGW
RLGEEVLVLRGDQELPVRSDVMDKFNSDRKGKRKVLLASTTACAEGISLTGASRLVMLDS
EWNHSKTMQAIARAFRPGQERMVYVYLLVASGTWEEDKYNSNRRKAWIAKMVFFGRYVDY
PLQNHVTEIDDKVLKELADEDETKAFHMIVKQD
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagggatccacaggcaaccataaccaccccatcggtgcagttccattcgaggcc
tttcataacggatcatggcatggagttaattctatagggatacgggatggcggtctcttt
gtgaaatttgtctgctgtggatcctctgtcgagcataatattgatggggactatgtgcgg
ttacattccagaaaagcaacttgcttagattgctcacatgttctcaggccaggtgctgat
gtctgtgtaaagcaagcaagttccagaggagaaacaaaatcttctgtaccattgtatcgt
gatgcaagactcatcaaaatcgtgaaaaagcattacacagaccagtgcctctgcttgttt
gctgttatttactacaaagaccagtgccctggcagcaaaggaaaagtgatagctggtaca
atagccaaggtggtgacaataggtgatgttttcatcttgcaaaagctccaacctggggag
ctccaggatcgcagcgtgcaatggagttcagcagaggattgcttccatcataatagaagc
aagctgttaagtgcaagattctccacagaagttacacacctgatagttttgtctatcctg
aagggaatggaattcaacatcaaggtggtagaaggcaggattatttatcaaattaccaaa
agcgatcaagtgtggtgtagtgttgattccatgagcatacctccaggttttggcaagaac
atggatataatatcatacaagccacatgatgaagctttacgcccaaggatcagaacggtt
ccagtcattcaggttaataaacacaaccttacagaatatgggtgtaccactgagatggat
gaattggatagtgcacaagatgttgaagtcttatatgagcgtgtggacttgagacgctca
aagcgtttgaaaactcagccagaccgctttactagttatgatgcacctaatttcaatcga
acctacaagaagaaagaggacaatgcatcatctactatgaatgaaaattcagagagtgat
ttgagttgggattcaccggttcaggaagaatcaggtaatgaagaggtgctaggaaattct
gggatgaagcaaacagctttcagccctttcatggtcaaggaagacacaaggtccatggag
ggccagtgcaagaacccgatgaaaagaactcagtgctcttttcctgtaaaggaaaaacca
atctctgtggaaatagaaaagaacacaacagagcaaagatgctcaggttctcacattcca
catacacctgcaaagaacaaggagaagtgcaatcgtccacctttatcgtttcaactgaag
ccctttacttcatctcacagcgtaggtggcaatagtgaaccagcattctgccaaaagagg
ggtaggaaaagaaagagacacatgcgtgaaagagaatacaaggaaatgatagaccaatgc
attggaaatatccagtgtgaaattgagagagattctgactttaaaataggtgtccagata
ttgaattgtagtgggaatgcttatcggaaagaggattttacatggccgtcttccactgat
actcaagaggagaaggatgagtttgaagaactgtggaaagaaatggactatgcattgacc
tcactagaacttcttgagaaaaagcagatgccagattcagaagccactcatgagaccgat
actgatttaggaaaaagaggagaactctgtcaccatgactgcatactggatgaacaactt
ggtctaacctgcagattgtgcaacgttgtgtgcactgaggcaaaggatatctttccacca
atgttcactggtaaggaccatgagaggcctggacggagtgaattttgtcaacatgatcat
gtgcttgacccttcttttcttgagatctgtgcaccagaattctccaaatttaagggatct
gggaatgtgtgggcttcgatcactgatcttgaaccaaagctacatgctcatcaaagaaaa
gcatttgaatttatatggaaaaacttggcaggatcattacaccttgaagaaatggatgat
ccgacagagagtagaggtggctgtgtggttgcacataccccaggagcgggtaaaacactg
ttgctgatttcatttcttgtcagttacttgaaagttcacccaagaagccgaccattggtc
cttactccaaaagctgcaatccatacatggaggagagagtttgagaaatggggcatttcg
cttcctttacatgtgctccactactctaatgaaaggggcaaagcaatggggaatcttagt
tcaaaaacgcgggtgatttttaagaacttccgccaaccatcctggaaaatgatgcggatg
atggatagtctagacaaactgtgcaagtggcatgaggatccaagcattctcctcatgaca
tatccttctttcttggcgcttacaaaagaagactcaaaaatgcagcatcgggcgttcatg
gcggaagttcttatgaacaaccctgggctactgatcctcgacgaagggcacaacccaaga
agcaacaaatcgaagttgagaaagctactgatgaaggtgaagactgaatttagaattctc
ttgtctggtacagtcttccagaataactttggagaatatttcaacaccttagcattggct
agacctcgttttgtcaatgatgttatgacggcgctagttccagaagcagaaagggaagca
cataaaaggactggcaaacatcaagaagcacttgcaaggcgtatttttgtggaaaaagtg
ggacaaaagatcgagtctagtagcatcgatgacagggtggatggcatctctgtgttaaac
aagcttactcgtggattcatcgattcatttgaagggacagaacagaacaatcttccaggg
attcgtgtgtatacccttttcatgaaacccaccgacatccaggaagaggtgctggcaaaa
gtaacaatgcctgtaccaggcgatgcccgttacccactggaggttgagctgctcatcaca
attgcttctatccatccttggcttataaaaacaaccaagtgtgctagcacttactttacc
ctagaagaagtagctagagttgagaagtacaagtggacttacgatgttgggtgcaagtca
aagtttgtaatggatcttctgcacaagtcctcattcagaggggagagagtgctgatattt
tgtcacaacgtgtccccgataaactttctggtgaagctgattgagattgcgtttggatgg
cgtcttggggaggaagtcttggtgttgcgaggcgatcaagagctccctgtgcgctcggat
gtcatggataaattcaacagcgacagaaagggaaagaggaaggtgctgcttgcttcaaca
acagcctgtgccgagggtatcagtctgaccggtgcatcaagactagtgatgctggattca
gagtggaaccattcaaagacaatgcaggcaatagcaagggcattccggcctggccaggag
agaatggtgtatgtctaccttcttgtggcgtctgggacatgggaggaagataaatacaac
agcaacaggaggaaagcttggattgcaaaaatggtcttctttgggcgttatgttgactat
ccattgcaaaaccatgtgactgaaatcgatgataaagttctgaaggagcttgctgatgaa
gatgagaccaaagctttccatatgatagtgaagcaggactga
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