Panicum virgatum (switchgrass): 120662259
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Entry
120662259 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120662259 isoform X1
KO
K06100
symplekin
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120662259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120662259
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120662259
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120662259
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120662259
U7-dependent histone pre-mRNA processing factors
120662259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT_EZ
HEAT
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
120662259
NCBI-ProteinID:
XP_039797365
LinkDB
All DBs
Position
2N:69913311..69933779
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AA seq
1258 aa
AA seq
DB search
MVAMLAARNPSPSFHAHDRPPPPAHDIAERLSHLRDLRREPLPRRVARIADLHTDEASPV
RKHAAEIIGEVGSKHMEYLPDIIPCLLHLLNDEAPAVVRQAIKTGTALFAKLLQHLVIQG
LFSTGGIDDALKSSWEWLLKFKSAVSLMAFQTTGNEGARLLAVKFVEKTVLMYTPDPNIP
SDPTSEATKDMGFNVAWLRGGHPLLNVRDLAMEASQNLGLLLEQLKSPKVKSLSTSMIIV
FITSLSAIAQRRPSFYGRILPVLLSLDPASSIIKLRVPGAFHALKSAFSACLECTHSSAE
PWRARLLEAQNIINQGGSIEDTTNAGKNFGDTSNREESWPLMERSTDSSNKRSLAEDMNH
MTEDDGHSSKRIRHSLDIQEHSEEASKRNVESTSVNISSSQPISIRTGNSEAVYQLIGMF
AALAAQGDRAAGSLQILSSSIASDLLAEVVMVNMQHIPISRPEADQHQLPSTSSGDGIAL
SSSFSLLASLLKRAGQIDQYEVPPAKESAVVLSYADDVMTVPASSPVPSSVSLPMEENSS
SPNVPCMETGEVKVTSAGANSLVDILESSEASHASTEPQGAQEHVSSFISSLPADNSSAG
LSLAQSTETSSPSSSILEANNSQLSSLNSLGSQYALPKFVVNNIDLSDEAKDLLQKESFL
RILESDKQEATGGSIARLPLLAHLGVEFPLELDPWELLQKHVLSDYANNEGHELTLCILN
RLYREAEQDQDFLSSRTATSVYESFLLTVAENLRDMFPASDKSLGKLLCEAPYLPEDVLK
LLEGLCSPGSNEKQDKDIQSGDRVTQGLSAVWNLIMLRPLNQDRCLEIALQSSTHHLEEV
RMKAIRLVANKLFPMASISKKIEDFANEKLNSVLEVIPSGDSAATETATPEAHNDGILEN
LSASVADAQTLMSLYFALCTKKHSLLRHVFAIYGSLPQAAKQAVHRQVPILIRTIGSSPD
LLGIISDPPGDSQDLLMQVLQTLTDAAVPSKELTSSIKNLYSKTKDVEFLFAVLSHLPKD
EVLPVFPSIVNLPMDKFQAALSRILQGSSQNGPSLDPSEILIAIHVIYPDKEGIPLKKVM
DACSACFEQRTIFTQQILAKALNQLVEQIPLPLLFMRTVMQAIGVFPALVDFVMEIMSRL
VSKQIWKYPKLWVGFLKCAILTKPQSYGVLLQLPAPQLENALSKNPTLKAPLVEHAEQPN
VRSTLPRSTLVVLGLAEDQQQPAPAVSQVQSSQNQAADTRSSAADTTTEVTQESSAAS
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggtcgcgatgctggccgcccgaaatccctcgccgagcttccacgcgcacgaccgccct
cctccgccggcacatgacatcgcggagcgcctcagccatctacgcgatcttcgcagggaa
ccgctccccagacgcgtcgcccgcatcgccgacctccacaccgatgaggccagccccgtg
cgcaagcatgcagccgagattattggtgaggtcgggtccaaacacatggagtacctacca
gatatcatcccttgtttgctgcaccttctgaatgatgaggcgcctgcagttgtcaggcaa
gctatcaaaacaggaaccgccttgtttgccaagctgctccaacacctagttatccaggga
ttattttccaccggggggattgatgatgcccttaaatcatcatgggagtggctgctcaaa
ttcaaatctgctgtctctctcatggcatttcagaccactggcaatgaaggtgccaggtta
ctggccgttaagtttgttgaaaaaacagttcttatgtacacaccggatcctaatatccca
tcagatccaacaagcgaagctacgaaagatatgggattcaatgtagcatggttacgagga
ggtcaccctttgcttaatgtcagggatctagccatggaagccagccagaacctcggattg
ttgctagagcagctcaagtctcctaaagtaaaatcactcagtacttccatgatcattgtc
ttcattactagtctctcagctattgcccaaagaaggccttccttttacggacgcatactg
ccagttttactttccttggatccagcaagttcaatcattaaattgcgagtcccaggtgca
ttccatgctttgaagagtgccttttctgcgtgcctagaatgtacacattcaagtgctgag
ccgtggcgagcacgtctattggaagctcaaaatattatcaaccaggggggttcaatagaa
gatacaacaaatgctggtaagaattttggggacacatcaaacagggaagaatcgtggcct
ctgatggagagaagcactgacagtagtaacaagcgtagtctggctgaggacatgaatcat
atgacagaagatgatggtcactccagtaaaagaatcagacattcacttgatattcaagaa
catagtgaagaggcaagcaagagaaatgttgaatcaacctctgttaatatctcatctagc
cagcccatctctataagaactgggaattctgaagctgtgtatcaattaattggtatgttt
gcggctctagctgcacaaggtgacagagctgctggatcactgcaaatcctttcatccagt
atcgctagcgatttattagcggaggttgtaatggttaacatgcaacacatccctatttct
cgtcctgaagctgaccaacaccagcttccttctactagctctggggatggaatagcattg
tcaagttccttctctctgttggcatctctactgaagagagcgggtcaaattgatcaatat
gaagtgcctccagctaaggaatctgcagtagtattatcttatgcagatgatgtcatgaca
gttcctgctagttcacctgttcctagttcagtaagtcttcccatggaagagaacagtagc
agtcccaatgttccatgtatggaaacaggagaggtcaaagtaactagtgcaggtgccaat
agtttggttgatattctagaatcatcagaggcttcccatgcttcaacagaacctcaggga
gcccaagagcatgttagcagttttatcagttcattgcctgctgataattcctctgctggt
cttagtttggctcagtctacagaaactagcagcccaagctcctctatactggaagcaaac
aactcacagctttcatctttgaattcccttggttcacaatatgctcttccaaagtttgtt
gtcaataacattgatctcagcgacgaggccaaagatctgcttcaaaaagaatcatttttg
cgtattcttgagagtgataagcaagaagcaactggtggctcaattgctcgccttccgctg
cttgctcacttgggtgttgagtttcctctggaattggacccatgggagcttctccaaaag
catgtcctctctgactatgcaaataatgaggggcacgagttgactctatgcatcctgaac
cggttatatcgtgaggccgagcaggatcaagattttctttcatctagaactgctacatca
gtttatgaatcctttcttctgactgtagctgaaaatcttcgagacatgtttccggcttca
gataagtcacttggcaaattgctttgtgaggcaccatacttaccagaagatgtgttgaaa
cttctagaaggtttatgttctcctggaagtaatgagaagcaggacaaggatatccagagt
ggtgatagggtaacacaaggtctcagtgctgtctggaaccttatcatgctaagaccttta
aatcaggacagatgtctggaaattgctttgcagagttcaactcatcatttagaggaggtc
cgcatgaaggcaatacgtttggtagcaaataagttatttcccatggcaagcatttccaaa
aagattgaagattttgcaaatgaaaaacttaattcagttctagaagtgattccatctggt
gattctgcagctactgaaacagctactcctgaagcacacaatgatggtattttagaaaat
ttatcagcttcagtggcagatgctcaaactctaatgtcgctgtattttgcattgtgcacc
aagaaacattccctcctcagacatgtatttgcaatatatggtagcctacctcaagctgcc
aagcaggcagttcaccgacaagtaccaattctaatacgcacaataggctcctctcctgat
cttcttgggatcatctcagatccaccaggtgacagccaggacctcctaatgcaggtttta
caaaccctcactgatgctgcagttccatccaaagaattgacttcttccataaaaaactta
tattctaaaacaaaggatgttgagttcctttttgcagtcttgtctcatctgccaaaagac
gaggtcctgcctgtgttccccagtattgttaatcttcccatggacaagtttcaggccgcc
ctttcacgaatcttgcagggatcatcccagaatggcccttctcttgatccatcagaaatt
ttaattgcaattcatgtaatatatcctgataaggaaggaataccactcaaaaaggttatg
gatgcatgctctgcttgcttcgagcaaagaacaatattcacccagcaaattttggcaaaa
gcactaaatcaactggttgagcaaattcctcttcctttgctattcatgaggactgttatg
caagcaataggtgtttttcctgcattggtggattttgtgatggagatcatgtcacgcctt
gtgagcaagcagatttggaaatatcctaagttatgggtaggatttctgaagtgtgctatc
ttgacgaaacctcagtcatatggtgtgttactgcagttaccagctcctcaacttgagaat
gccttgagtaagaatcccacactgaaggcacccttggttgagcatgccgagcagccaaat
gtccgatctactcttccaaggtctactttggtggttctgggtcttgctgaagatcaacaa
caaccagcaccagcagtaagtcaagtgcagagcagccaaaaccaggctgccgataccaga
agctctgctgcagatacgactacagaagtaactcaggagtcttctgctgctagttag
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