Panicum virgatum (switchgrass): 120662445
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Entry
120662445 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase RHF2A-like
KO
K19043
E3 ubiquitin-protein ligase RHF [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120662445
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120662445
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120662445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
zf-RING_5
RING_XB3-XBAT31
zf-Nse
zf-RING_Vps41
DUF4302
zf_RING_Vps8_fungal
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
120662445
NCBI-ProteinID:
XP_039797528
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All DBs
Position
2K:complement(5049486..5053010)
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AA seq
350 aa
AA seq
DB search
MEELSSAAAFVEGGVQDACDDACSICLEAFSDSDPSAVTSCKHEFHLQCILEWCQRSSQC
PMCWQAISMKDPMSQELLEAVEEERNVQENHVRTTTIFRHPLLGDFEVPIDADDAEIEER
IIQHLAAAAAIRRSHRHARREGRRSRSAAHGHPQTLFFSTAETTSGGSMSSSSRQVGVRE
HAPIVISARPFPTVDSTQETAADTSAPDATLANSGPVVSDNRVSRNQTSPVSQDEAGPSD
VQSFSDSLKLRLQSVSTKYKDSITNSTRGWKERWFTQKNTISNLGSEVRWEVNAGIAAVS
RMMERLETRDGTGPSSTSATNVHSALDTNNQGASPPKVATVGNDASSSAT
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggaggagctctcgtcggcggcggcgttcgtggagggcggcgtccaggacgcctgcgac
gacgcctgcagcatctgcctcgaggccttctccgacagcgacccctccgcggtgaccagc
tgcaagcacgagttccacctccagtgcatccttgaatggtgccagagaagttcccagtgt
cccatgtgttggcaggcaatcagcatgaaggacccaatgagccaagagctccttgaggct
gttgaggaagagcggaatgtgcaagaaaatcatgtgcgcacaactactatttttcgccat
ccactgcttggagattttgaggtacccatcgatgcagatgatgcagaaattgaagaacgt
atcatacagcacttggcagctgcggctgcaatacgtaggtcacaccgccatgccagaaga
gaaggtcgtcgcagcagatcggcagcacatggccacccacaaactctattcttttcaact
gctgagaccacttctggtggatctatgtcatcaagttcacggcaagtaggggttcgtgaa
catgctcctattgtaatttctgctcgcccatttcctaccgtggattctacacaagaaaca
gctgcagacacatctgcgcctgacgctaccttggctaatagtggccctgttgtgtcagat
aatagagtttctaggaaccaaacttcacctgtcagccaagatgaagctggaccatctgat
gtgcagtcattctcagactcgttaaaattacgcctgcaatcagtttcaacaaagtacaag
gattctataacgaatagtacacgcgggtggaaggaaaggtggttcacgcagaagaacact
atatcaaatcttggttcagaggtgaggtgggaggtcaatgctggaatcgctgctgtatca
cgcatgatggagcgactggaaacacgagatggaacaggaccatcgtctacttcggcaacc
aacgttcactctgctttagatacaaataatcaaggagcttcgcccccaaaagttgcgact
gttggaaatgacgcctcatcttcagcaacttga
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