Panicum virgatum (switchgrass): 120662563
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Entry
120662563 CDS
T07260
Name
(RefSeq) polygalacturonase QRT2-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00040
Pentose and glucuronate interconversions
pvir01100
Metabolic pathways
Module
pvir_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120662563
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
120662563
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Motif
Pfam:
Glyco_hydro_28
NosD
Beta_helix
Motif
Other DBs
NCBI-GeneID:
120662563
NCBI-ProteinID:
XP_039797621
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Position
2N:36591611..36592781
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AA seq
297 aa
AA seq
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MMRKYIFHPFIFISESLLMWILLAFSFLQPCKQAPTALTFSSCKNLRLENLKLRNSQQIH
MSVEDCSHVKLAHLSITAPGASPNTDGIHIARSRRVHVTDCTIKTGDDCISIEDGTENLH
VKNILCGPGHGISIGSLGDHGSEAYVINVTVDSVTLHGTTNGARIKTWQGGRGYAKNIIF
RNTIMDSVWNPIIIDQNYCDSAAPCKKQKSAVEVSNVLFKNIRGTSASKEAIKLSCSSGV
PCHGIALENVKLTLKGGSGVAKSTCENARWRKSGTVAPQPLYPHFRTIMSILEFRFS
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggaaatatatattccatcctttcatttttatttctgaaagcttgctgatgtgg
attcttcttgcattttcctttcttcagccatgcaaacaagctccaacggctttgacattc
tcctcctgtaaaaatctcagattggaaaatctgaaactgaggaacagccagcaaatccac
atgtcagtagaggattgcagccacgtcaaattagcccacctatcaatcacagccccaggg
gctagccctaacaccgatggcatccacatcgcccgcagcagacgtgttcacgtcacagac
tgcacaatcaagaccggagacgactgcatctccattgaggacggaactgagaacctccat
gtcaagaacatcctgtgtggaccggggcatggaatcagcattggcagcctaggcgaccat
ggatctgaagcttatgttatcaatgtcacagtcgacagcgtgacactgcatgggacgaca
aacggagctcgcatcaagacatggcaaggggggaggggctatgcaaagaacatcatcttc
cggaacacgatcatggacagcgtatggaacccaatcatcatcgaccagaactattgtgac
tctgccgcaccctgcaagaaacagaaatctgcggtagaggtgagcaatgtgctgttcaag
aacatcaggggcacaagtgcatcaaaagaggctatcaagctgagctgcagctcaggcgtg
ccttgccatggcatagccctggagaacgtgaagctgactctcaagggcggcagtggtgtt
gccaagagcacttgtgagaatgcaagatggaggaaatcagggacggtagctccacagcca
ttgtacccccattttagaactattatgagcatacttgaatttagattttcataa
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