Panicum virgatum (switchgrass): 120662578
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Entry
120662578 CDS
T07260
Name
(RefSeq) valine--tRNA ligase, chloroplastic/mitochondrial 2-like isoform X1
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120662578
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120662578
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120662578
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
120662578
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class I (U)
120662578
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
120662578
Prokaryotic type
120662578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
tRNA-synt_1g
Val_tRNA-synt_C
tRNA-synt_1_2
tRNA-synt_1e
Motif
Other DBs
NCBI-GeneID:
120662578
NCBI-ProteinID:
XP_039797633
LinkDB
All DBs
Position
2K:5155749..5191412
Genome browser
AA seq
965 aa
AA seq
DB search
MALAGPSSTLLSSSSSACLRRLNPLLLSAACRRPAGGQRRAARRFCAAIASEADAFTSPE
VAKSFDFTNEERIYKWWQSQGFFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDI
MVRYFRMKGRPALWIPGTDHAGIATQLVVEKMLAAEGVKRTDLTREEFTKKVWEWKEKYG
GTITNQIRRLGASCDWSRERFTLDEQLSRAVIEAFVRLHDKGLIYQGSYLVNWSPNLQTA
VSDLEVEYSEEPGFLYFIKYRVAGGTRDDFLTIATTRPETLFGDVAVAVNPEDKRYAQYV
GRLAIVPLTCGRHVPIIADRYVDPEFGTGVLKISPGHDHNDYHIARKLGLPILNVMNKDG
TLNDVAGLYSGMDRFEAREKLWSDLVETKLAVKKEPYTLRVPRSQRGGEVIEPLISKQWF
VTMEPLAEKALRAVENRQLTILPDRFEKIYNHWLTNIKDWCISRQLWWGHRIPVWYIVGK
KCEEDYIVARTEEEALTKAQEKYGKSVEIYQDPDVLDTWFSSALWPFSTLGWPDLSKDDY
KHFYPSTVLETGHDILFFWVARMVMMGIEFTGSVPFSYVYLHGLIRDSEGRKMSKTLGNV
IDPLDTIKDYGTDALRFTLSLGTAGQDLNLSTERLTSNKAFTNKLWNAGKFLLQNLPDRS
DVSAWDALLANKYDTEASLQELPLPECWVVTGLHGLIDRVSTSYDRFFFGDAAREIYDFF
WGDFADWYIEASKTRLYHSADKLAAARAQSVLLYVFENILKLLHPFMPFVTEELWQAFPY
RKQALMVTPWPTTDLPKDLRSIKRFQNLQSLIRGIRNVRAEYTVEPAKRISASVVATADV
LEYVSKEKQVLALLSKLDVQNVHFTESAPGDANQSVHIVADDGLEAYLPLADMVDVSEEV
KRLSKRLSKMQSEYDALMARLNSQSFVEKAPEDIVRGVREKASEAEEKISLTKNRLAFLQ
STVST
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgcgggcccttcctcgacgctcctctcctcatcctcctccgcctgcctccgc
cgcctcaacccgctgcttctctccgccgcatgccgccgcccggcggggggccagcgccgc
gccgctcgcaggttctgcgcagcgattgcctccgaggcggatgcgttcacctcaccggag
gtcgcgaaatcgttcgacttcaccaacgaggagcggatttacaagtggtggcaatctcaa
ggattctttaagcctaattttgaccgtggaggagatccatttgtcatcccgatgccaccc
ccaaatgttaccggatcactgcatatgggccatgcgatgttcgtcacccttgaggatata
atggttaggtatttccgaatgaaagggagacctgcactctggatacctggcactgaccat
gccgggattgcaactcagttggtcgtggaaaagatgctggctgctgaaggtgtcaaaagg
acagatctgacacgagaggagttcaccaaaaaagtttgggagtggaaagagaaatatggg
ggcactatcactaatcagattaggcgattgggcgcttcttgtgattggagtcgtgaacgt
ttcactctcgatgaacaattgagtcgtgcggttatcgaagcgttcgttaggcttcatgat
aaaggtcttatataccaaggatcttatttggtcaactggtctcctaacctgcaaactgca
gtgtccgatttagaagtagaatactctgaagaacctggatttttgtactttatcaagtac
cgtgttgctggcggtaccagggacgattttctgactattgcgaccacaaggcctgaaact
ttatttggtgatgttgccgtcgctgttaacccagaggataaacgttatgcccaatatgtc
ggcagattggctattgtacccttgacatgtgggagacatgtcccgattattgctgaccgg
tatgttgatccagaatttggaactggggtgctgaagattagccctggacatgatcataat
gattatcatattgctcgaaagcttgggctaccaattctcaatgttatgaacaaagatggt
acgctaaatgatgttgctggattgtacagtggtatggaccgatttgaggcacgagagaag
ttatggtctgaccttgttgagactaagttggcagtaaagaaagaaccttatacgcttcga
gttcctagatctcaacggggtggtgaagtgattgagccgttgattagtaagcaatggttt
gtcacaatggagccattggctgagaaggcccttcgtgctgttgaaaacaggcaattaacc
attcttccggatagatttgagaagatatataatcattggctaacaaacataaaggattgg
tgtataagtagacaattatggtggggtcatcgtataccagtttggtacattgttggaaag
aaatgtgaagaagactatattgttgctagaactgaagaggaggcactaacaaaagctcag
gaaaaatatggaaaatcagtagaaatatatcaagatcctgatgttcttgatacgtggttc
tcaagtgctctctggcctttcagcacgcttggttggcctgatctttccaaggatgattat
aagcatttttatccttcaactgttctggagacaggccatgacattttgttcttctgggtt
gcacgaatggtcatgatgggaattgagtttacaggatcagtgccattttcttatgtctat
cttcatggtcttatccgggattctgagggacggaaaatgtcgaagacattgggaaatgtc
attgaccccctagataccatcaaagattacgggactgatgctttgagatttacactatct
ttgggcactgcaggccaggacctcaatctctctacagaaaggttgacatcaaataaggct
ttcacaaacaagctgtggaatgcaggcaaatttttgttgcagaatttgcctgatagaagt
gatgtctcggcatgggatgctttgttagcaaataagtatgacacagaagcatcacttcag
gaactgccattgccagaatgctgggtggttacaggactacatggactaattgatagggtc
agcacaagctatgacaggtttttctttggagatgctgctagagaaatatatgatttcttt
tggggggattttgctgattggtatattgaggcaagcaaaacacgtctctaccactcagct
gacaagttagcagctgctagagcacaaagtgttctgctgtatgtgtttgaaaacatactg
aagttactgcatcccttcatgccgttcgttactgaagaattatggcaggcatttccatac
agaaagcaagcacttatggttactccctggcctaccactgaccttcctaaggatttgagg
tccatcaaaaggtttcaaaatctgcaatcattgataagaggaatcagaaatgttagagca
gaatacactgttgagccagcaaaacggatatcagcttctgttgttgctactgcagatgtc
ctggaatatgtatcgaaggagaagcaggtcctggctttactttcaaagcttgatgttcag
aatgtgcattttactgaatcagcaccaggtgatgcaaaccagtctgttcacattgttgct
gatgacggtctggaagcctatctacctttggctgacatggttgatgtgtccgaggaggtt
aagcggctgtccaagcgcctctctaagatgcagtcagagtatgatgctctcatggcccgc
ctcaactcccaaagttttgtagaaaaggctcctgaagatattgttcgtggagttcgtgaa
aaagcgtccgaggctgaggagaagatctctctcactaagaatcggcttgcatttctgcaa
tcaactgtctcaacgtaa
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