Panicum virgatum (switchgrass): 120662610
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Entry
120662610 CDS
T07260
Name
(RefSeq) ubiquitin-60S ribosomal protein L40-like
KO
K08770
ubiquitin C
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120662610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120662610
Ubiquitin system [BR:
pvir04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
120662610
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Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Ribosomal_L40e
Rad60-SLD
Ubiquitin_2
DUF2604
Rad60-SLD_2
Dsc3_N
Ubiquitin_5
OTU1_UBXL
TBK1_ULD
zf-C4pol
DUF6797
zf-tcix
Motif
Other DBs
NCBI-GeneID:
120662610
NCBI-ProteinID:
XP_039797654
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Position
2N:40219829..40226489
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AA seq
296 aa
AA seq
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MQIFVKTLTRKTVTLEVESSDTVANVKAKIQDKEGIPPEQQRLIFGGKQLEDERTLADYN
IQKESTLHLVLRLRGSGKGGSYPKIDLNLLELALKYRQHKMICRKCYARNSSRAENCRKK
KCGHSNERAIPELRHPTPPAPPKPHSSGERSPSSGEMQIFVKTLTGKTATLEVKSSHTVA
NIKAMIQDKEGIPLDRHWLIFAGKQLEDERTLADYSVQKESTLHLVLRLSGGGKGGSYRR
NVEPNLLQLALKYRRQRNMICRECYARNPIRAYNCRKKKCGHFNELRLKKKLAYKD
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcttcgtgaagaccctcaccaggaagacggtgacgctggaggtcgagagcagc
gacaccgtcgccaacgtcaaggccaagatccaggacaaggaaggcatccctccggagcag
cagcggctcatcttcggcgggaagcagctggaggacgagcgcaccctggccgactacaac
atccagaaggagtcaacgctgcacctggtgctccgcctccgcggtagcggcaagggcggc
agctaccccaagatcgacctcaacctcctcgagctcgcgctcaagtaccgccagcacaag
atgatctgccgcaagtgctacgcccgcaactccagcagggctgagaactgccgcaagaag
aagtgcggccacagcaacgagcgtgcaatccccgagctccgccaccccaccccacccgct
cccccaaaaccccattcctccggcgagcgatccccgagctccggcgagatgcagatcttc
gtgaagacgctgaccgggaagacggcgacgctggaggtcaagagcagccacaccgtcgcc
aacatcaaggccatgatccaggacaaggaaggcatccctctggaccgtcattggctcatc
ttcgccgggaagcagctggaggacgagcgcacactcgccgactacagcgtccagaaggag
tcgacgctgcacctggtgctccgcctcagcggcggcggcaagggcggcagctaccgcagg
aacgtcgagcccaacctcctccagctcgcgctcaagtaccgtcgtcagcgcaacatgatc
tgccgcgagtgctacgcccgcaatcccatcagggcctacaactgccgcaagaagaagtgc
ggccacttcaacgagctgaggttaaagaagaagctggcttacaaggactaa
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integrated database retrieval system
