KEGG   Panicum virgatum (switchgrass): 120662940
Entry
120662940         CDS       T07260                                 
Name
(RefSeq) SKP1-like protein 1B
  KO
K03094  S-phase kinase-associated protein 1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03083  Polycomb repressive complex
pvir04120  Ubiquitin mediated proteolysis
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120662940
   04120 Ubiquitin mediated proteolysis
    120662940
  09126 Chromosome
   03083 Polycomb repressive complex
    120662940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120662940
   04121 Ubiquitin system [BR:pvir04121]
    120662940
   03036 Chromosome and associated proteins [BR:pvir03036]
    120662940
Membrane trafficking [BR:pvir04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    120662940
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Adaptor protein
     120662940
   Cul7 complex
     120662940
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     120662940
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     120662940
SSDB
Motif
Pfam: Skp1 Skp1_POZ
Other DBs
NCBI-GeneID: 120662940
NCBI-ProteinID: XP_039797919
LinkDB
Position
2N:66172317..66173191
AA seq 225 aa
MAAEGEKRGAMEAEKGAVEKGGDVAAASEEGKCVEEAKEVMAGGKMVILRSSQPEKKRYE
VPEAAARLSVILGGMLDGGCTIDDDGVVIPFTARTLDTVFEYCSKHAEATKSDSDHFAAA
ATKSDPNPSAEASVGGVNTAASENLEDWDRKLVDRLSMDDLYDVIHAANFLAIKGLLDVV
YQRAADMIKGKTPDEIRATFNITNDFTEEDEEEFREQYSWIFDVE
NT seq 678 nt   +upstreamnt  +downstreamnt
atggcggcggagggagagaagaggggagcgatggaggcagagaagggagcggtggagaag
ggaggggacgttgcggcggcgtcggaggaggggaagtgtgtggaggaagcgaaggaggtg
atggccggcggtaagatggtcatcctgaggagctcgcagccggagaagaagcggtacgag
gtcccggaggcggcggcgcggctgtcggttatcctcggaggaatgctcgacggaggttgc
accatcgacgacgacggcgtcgttatccccttcaccgccaggaccctggacacggtgttc
gagtactgcagcaagcacgccgaggctaccaagtccgactccgaccacttcgccgctgcc
gccaccaagtccgaccctaaccccagcgccgaggccagcgtcggcggtgttaacacggcg
gcgtccgagaacctggaggattgggaccgcaagctcgtcgaccgcctaagcatggacgac
ctctacgacgtcatccacgccgccaacttcctcgccatcaaggggctcctcgacgtcgtc
taccagagggccgccgacatgatcaagggcaagacccctgacgagatccgcgccaccttc
aacatcaccaacgacttcaccgaggaggacgaggaggagtttcgcgagcagtactcctgg
atcttcgacgtcgagtag

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