Panicum virgatum (switchgrass): 120662995
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Entry
120662995 CDS
T07260
Name
(RefSeq) RNA-binding protein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120662995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120662995
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120662995
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
120662995
NCBI-ProteinID:
XP_039797965
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Position
2N:2229600..2233663
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AA seq
384 aa
AA seq
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MAAAAQGGAAGPAAGEEEAGESRKLFVGGIPSAAQEAELRAHFARFGEVRSAIVMRDRET
GHGRGFGFVEFEDEAAAAAALGDGDKPRHFICGRMVDVKRARTRAPRNQGEQNSQPQQPE
NGRGQGHQDNQQQPAGHGTADSGNNVSYDSKKVFIGGLRDNITEEEFKAYFETFGTVTDV
VVIYDSLTSRSRGFGFVTFDSEEAVGKVMRQSFHNLNGTKVEAKIAIPKDEQYYRNGRGR
GARPFGSRGPAGYEGSAYQPYNARFGLYNGYIPQPVPAQPYFPAPYFAVGGYPYGSGYPS
QGVMSNVPGMISRLVPPAHGTYPHMYPGFNFVYRAGYGGAATSFQQGINGGSDNKKDQIN
VDMQQVDSTASVTTMLEHMKLGSQ
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcggcgcagggcggcgccgcgggcccggcggcgggcgaggaggaggccggc
gagagccgcaagctcttcgtgggcggcatcccgtccgcggcgcaggaggccgagctgcgg
gcgcacttcgcccgcttcggggaggtgcgctccgccatcgtgatgcgggaccgggagacg
ggccacggccgcggcttcggcttcgtcgagttcgaggacgaggccgccgcggccgccgcg
ctcggcgacggggacaagcccaggcacttcatctgcggccggatggttgacgttaagagg
gccaggacaagagctccacggaaccagggcgagcagaactctcagcctcagcagcctgaa
aacggccggggtcaggggcaccaggacaatcagcagcagccggctgggcacggtactgct
gacagcggtaacaatgtgagctatgattcaaagaaggtcttcattggcggcttgcgggat
aatatcaccgaggaggagttcaaggcttactttgagacttttggcactgtaacagatgtt
gtggtgatttatgacagcttgacaagccgctcgagggggttcggttttgtcaccttcgat
tcggaggaagcagtgggaaaggtgatgcgacaaagcttccataacctgaatggaaccaag
gttgaggccaagattgctatccccaaggatgagcagtattaccgtaacggtcgaggccgt
ggggcacgaccctttggcagcaggggccctgctggctatgaaggttctgcataccaacca
tacaatgctagatttggtctttacaatggctacataccacaacctgtgcctgcacagccc
tactttcctgcaccctattttgctgtgggaggctatccgtatggcagtgggtacccaagc
caaggtgtgatgtcaaatgttcctggaatgatatcaaggctggttcctccagcccatgga
acatatcctcatatgtatccagggtttaactttgtatacagagctggttatgggggtgca
gctacttcttttcagcaaggaattaatggtggaagtgataacaaaaaggatcaaatcaat
gtagatatgcagcaagttgacagcactgctagcgttacaacaatgttggaacatatgaag
ctaggttcacaatga
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