Panicum virgatum (switchgrass): 120663343
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Entry
120663343 CDS
T07260
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00040
Pentose and glucuronate interconversions
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120663343
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
120663343
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Phage_cement
NosD
DUF7496
Motif
Other DBs
NCBI-GeneID:
120663343
NCBI-ProteinID:
XP_039798079
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Position
3N:52167115..52169325
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AA seq
435 aa
AA seq
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MAFLIFLCFSSFLHLSISMSSPSPLPVFSSAAGQEVVQDAVRSMNMSLHRRMLGDDDCGT
GNTVDDCWRCDPSWADNRQRLADCAIGFGRDAGGGKNGKTYVVTDPSDDDPAAPAPGTLR
YGLVQEEPLWITFARDMTIRPKEELVVSSYKTVDGRGAAVVVGDGGACFVLHNVNHVIIH
GLAIRDCKPARSSSSSASGGLSDGDGITILSSTDVWVDHCTLEACTDGLIDVTEGSTRVT
LTNNLLRNHDKAILLGHSDNFPDDKDMKVTVAYNRFGPGLVQRMPRCRFGLFHVINNDYI
NWQLYAIGGSASPTILSHGNRFLADKEKEVTKREEAPESEWSTWTWISEGDMMLNGAFFR
SSGSARPDVDTPSFAKSVSSVSLMTASAGVLSSSKEAGAYAYTGGGLGGARPTLTSGPNT
LLSLGFVLYVLIYYS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggcctttctcatcttcttgtgtttttcatcttttcttcacctttctatttccatgtct
tctccatcgccattgccagtcttctcatccgcagctgggcaagaagtcgtgcaagatgca
gtcagaagcatgaacatgtcgctgcaccgacggatgcttggcgacgacgactgcggcact
ggcaacacggtggacgactgctggcgctgcgaccccagctgggcggacaaccggcagcgc
ctcgctgactgcgccatcgggttcggccgcgacgccggcggcggcaagaacggcaagacg
tacgtggtgacggacccgagcgacgatgacccggcggccccggcgccgggcaccctccgc
tacggcctcgtccaggaggagcccctgtggatcacgttcgcgcgcgacatgaccatcagg
cccaaggaggagctggtggtgtcctcgtacaagaccgtggacggccgcggcgccgccgtg
gtcgtcggggacggcggcgcctgcttcgtgctgcacaacgtgaaccacgtcattatccac
gggctcgccattcgcgactgcaagcctgcgcggtcgtcgtcgtcgtctgctagtggtggt
ttgtcggacggcgacggcatcaccatcctcagttccaccgacgtgtgggtcgaccactgc
acgcttgaggcctgcaccgacggcctcatcgatgtcacggaaggctccacacgcgtgacc
ctgaccaacaacctcctgaggaaccatgacaaggcaatacttctcggccacagtgacaat
ttccctgatgacaaggacatgaaggtcaccgtcgcgtataaccgtttcgggccaggtctt
gttcaaagaatgccaaggtgtcggttcgggctgtttcatgtcatcaacaatgactacata
aactggcagctatatgccattggtggcagcgcttcgccaacaattctgagccatggcaat
cgattcctcgctgacaaggaaaaagaggtgacgaagcgcgaggaagcaccagagagtgag
tggagtacctggacctggatttctgaaggtgatatgatgctcaacggcgcattcttcaga
tcatcgggcagtgccagaccagatgtcgacacccctagcttcgccaaatcggtctcttca
gtgtcgttgatgactgcctcggcaggggttctgtcatcatccaaagaggcaggggcgtat
gcgtatacagggggtgggctgggtggggctcggcccaccctaacgtctggcccaaacact
ctgctatccttaggttttgtgttatatgttcttatttattactcgtag
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