Panicum virgatum (switchgrass): 120663362
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Entry
120663362 CDS
T07260
Name
(RefSeq) ubiquitin-activating enzyme E1 2-like
KO
K03178
ubiquitin-activating enzyme E1 [EC:
6.2.1.45
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120663362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120663362
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120663362
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.45 E1 ubiquitin-activating enzyme
120663362
Ubiquitin system [BR:
pvir04121
]
Ubiquitin-activating enzymes (E1)
Ubiquitin activating enzyme
120663362
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120663362
Exosomal proteins of other body fluids (saliva and urine)
120663362
Exosomal proteins of colorectal cancer cells
120663362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA_E1_SCCH
ThiF
E1_FCCH
E1_UFD
E1_4HB
Motif
Other DBs
NCBI-GeneID:
120663362
NCBI-ProteinID:
XP_039798094
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Position
3N:complement(15240..20607)
Genome browser
AA seq
1054 aa
AA seq
DB search
MLPQKRGVDAGEVQDLHNKAPRPAAPAPAQDHHKEDPAHMAARAPEIDEDLHSRQLAVYG
RETMKRLFGSNVLVSGLQGLGAEIAKNLVLAGVKSVTLHDDGKVDLWDLSSNFFLSEKDI
GLNRAQACVPKLQELNNAVIISTITGDLTKEQLSNFQAVVFTDISIEKAVEFDDYCHSHQ
PPIAFIKSEVRGLFGSVFCDFGPEFTVLDVDGEEPHTGIVASISNDNPALVSCVDDERLE
FQDGDLVIFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTSYGTYIRGGIVTQVKPPKV
LKFKTLKEAIKEPGEFLMSDFSKFDRPPLLHLAFQALDKFRTELLRFPIAGSAEDAQKLI
DFAISINESLGESKLEEIDKKLLQHFASGSRAILNPMAAMFGGIVGQEVVKACSGKFHPL
YQFFYFDSVESLPIEPLEASDLKPENSRYDAQISVFGTKLQKKLEQSKIFMVGSGALGCE
FLKNLALMGISCSENGKLTVTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAMAINPK
LHVEALQNRASPETENVFNDAFWESLDAVVNALDNVTARMYIDSRCVYFQKPLLESGTLG
AKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPTE
VNAFLSNPSGYATAARTAGDAQARDQLERVIECLNRDKCDTFQDCITWARLKFEDYFANR
VKQLTFTFPEDAMTSSGAPFWSAPKRFPRPLEFSSSDPSHLNFLLAASILRAETFGIPIP
DWAKNPKKLAEAVDKVILPDFQPKQGVKIETDEKATSLSSASVDDAAVIEELIAKLEAIS
KTLPPGFHMNPIQFEKDDDTNFHMDLIAGFANMRARNYSIPEVDKLKAKFIAGRIIPAIA
TSTAMATGLVCLELYKVLAGGHKVEDYRNTFANLAIPLFSMAEPVPPKTIKHQDMAWTVW
DRWTITGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDKKVVDVAREVAK
VEVPSYRRHLDVVVACEDDDDIDVDIPLVSIYFR
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgcttccccagaagcggggggtcgacgccggcgaggtccaggacttgcacaacaaggcc
ccccgacccgccgcccccgcacccgcccaagaccaccacaaggaggacccagcccacatg
gccgccagggcgcccgagatcgatgaggacctccacagccgccagctcgccgtctacgga
cgcgagaccatgaagcgcctcttcggctccaacgtcctcgtctctggactacagggactc
ggcgcagagatcgcaaagaaccttgttcttgcgggtgtcaagtccgtaaccttgcatgat
gatggcaaagtggatctatgggatttatcaagcaacttcttcctctccgagaaggatatt
ggtctaaaccgtgctcaagcttgtgttccaaagcttcaagagcttaacaatgctgtaatc
atctctaccattactggtgatttgaccaaggagcagctttctaactttcaggctgtggta
tttactgatatcagcatagaaaaagcagttgagtttgatgattactgtcatagccatcag
ccaccaatcgctttcattaagtcggaagttcgtggtcttttcggcagtgttttctgtgac
ttcggtcctgaatttactgtgttggatgttgatggtgaggagccacatacaggaatcgtg
gcatcaatcagcaatgacaacccagcacttgtttcttgtgtggatgatgagcgtctggag
ttccaggatggtgatctagttattttctctgaagtgcatggaatgactgagctcaacgat
ggaaaaccaagaaagattaagagtgctaggccttattcttttactctagaagaagacacc
acctcatatggcacttacattagaggtggtattgtcacacaagtgaagccacccaaggtt
cttaagttcaaaaccttgaaggaggcaatcaaggagccaggagaatttctcatgagtgat
ttctccaagttcgaccgcccacctcttttgcatttggccttccaagctctggacaagttt
aggactgagttgctgcgattccctattgccggttcagctgaggatgcacaaaagctgata
gattttgctattagtattaatgaaagtcttggtgaaagtaagcttgaagaaatcgacaaa
aagctcctgcagcattttgcaagtggttccagggctattttgaatccaatggctgcaatg
tttggtggtattgtaggccaggaagttgttaaagcatgctcagggaaattccacccactt
tatcagttcttctactttgattctgttgaatcactgccaattgaaccgttggaggctagt
gatttgaagccggagaacagtagatatgatgcacaaattagtgtatttgggactaagctt
caaaaaaaactggagcagtcaaaaatctttatggttggttctggggctcttggatgtgaa
tttttgaagaaccttgcattaatgggcatttcttgcagtgagaatgggaagctgactgtg
acagatgatgatgttatagaaaagagcaatctcagtcgccagtttctcttccgtgactgg
aacattgggcagcccaagtccacagttgctgctactgccgctatggcaattaatcctaag
cttcatgttgaggcccttcagaacagggcaagtcctgagactgaaaatgtgtttaatgac
gccttttgggagagcttggatgctgttgtcaatgccttggacaatgtgactgcaagaatg
tacattgactccagatgtgtatatttccagaagccacttcttgaatctgggactctgggt
gctaagtgcaacacgcagatggtcattcctcacctaacagaaaactatggggcatccaga
gatccaccagaaaagcaggcgccaatgtgcactgtacattcatttcctcataatattgat
cactgcctaacatgggcaaggtctgagtttgagggtctactggagaagactcccactgaa
gtaaatgcgttcctgtcgaatcctagtggatatgctactgctgcaagaactgctggtgat
gcgcaggctagggatcaacttgagcgggttattgagtgccttaacagagacaagtgtgac
acattccaagattgtattacctgggctcgccttaagtttgaggattatttcgccaaccgt
gtgaagcagctgacgttcaccttccctgaagatgcaatgacaagctctggtgctcctttc
tggtctgctcctaagcggtttccgcgaccgctggagttctcatcttctgatccaagccac
ctcaactttctgttggctgcctcaatactaagggcggagacatttggaatacccatacct
gattgggccaaaaacccaaagaagctagctgaagctgttgacaaggtcatcctacctgat
ttccaaccaaaacagggggttaaaatagagacagatgagaaggctactagcctatcctct
gcatctgttgatgatgctgctgtcattgaagagcttattgcaaagttggaagcaatttcc
aaaacattgccaccaggattccacatgaacccaatacagtttgagaaggatgatgacacc
aatttccatatggacttgatagctggctttgctaacatgcgggcaaggaactacagcatc
cctgaagttgacaagctgaaggcaaagttcatagctggaaggatcattccagccatcgcc
acctcgactgcaatggccactggccttgtctgcctggagctttacaaagtcctagctggg
ggtcacaaggttgaagactaccggaacacatttgcaaacctcgcaatccccctcttctcc
atggcagagcctgtgccacccaagaccatcaagcaccaggacatggcctggaccgtgtgg
gaccgctggactataactggcaacatcacgctgagggaactcctggagtggctcaaggag
aagggcttgaatgcatacagcatatcctgtggcacctcgcttctgtacaactccatgttc
cccaggcacaaggagcggctggacaagaaggtggtggatgtggctagggaggtggccaag
gtggaggtgccctcttatcgccgccatctggatgtcgtggtggcctgtgaggatgacgat
gacattgatgtggacattcctcttgtgtccatttacttccgttga
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