KEGG   Panicum virgatum (switchgrass): 120663377
Entry
120663377         CDS       T07260                                 
Name
(RefSeq) regulatory-associated protein of TOR 1-like isoform X1
  KO
K07204  regulatory associated protein of mTOR
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04136  Autophagy - other
pvir04142  Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    120663377
   04136 Autophagy - other
    120663377
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120663377
Membrane trafficking [BR:pvir04131]
 Autophagy
  Other autophagy associated proteins
   mTORC1 complex
    120663377
SSDB
Motif
Pfam: Raptor_N Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_WDR36-Utp21_1st WD40 WD40_WDHD1_1st WDR55 Beta-prop_EML_2 Beta-prop_VPS8 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd DSE1_N Beta-prop_NOL10_N Beta-prop_WDR90_POC16_2nd ASA1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_DCAF4 Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Peptidase_C14 Beta-prop_WDR75_1st Lgl_C
Other DBs
NCBI-GeneID: 120663377
NCBI-ProteinID: XP_039798111
LinkDB
Position
3N:complement(135014..145634)
AA seq 1385 aa
MALGDLMASRLVHSSSSPSPSTAAPPAPLPNHHHNHVTDDLPVANGPEPRNGLEPAEVDK
PAPVTYLPQVMVLCEQRHEGIDEAAAAAAGPSTSGLVSKWRPKDRMKTGCVALVLCLNIS
VDPPDVIKISPCARMECWIDPFSMAPPKALANIGKTLHSQYERWQPKARYKLQLDPTVEE
VKKLCNTCRKYARSERVLFHYNGHGVPKPTTNGEIWVFNKSYTQYIPLPITDLDSWLKTP
SIYVFDCSAAGIIVKAFLERLDWSSSSSSSSQKDCILLAACEAHQTLPQSAEFPADVFTA
CLTTPIKMALHWFCKRSLLRGSMDRSLIDQIPGRQNDRKTLLGELNWIFTAITDTIAWNV
LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISYPLLPPTHQHHMWDAWDMAAE
ICLSKLPQLIADPNAEFQPSPFFTEQLTAFEVWLDHGSQDKKPPEQLPIVLQVLLSQSHR
FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTSAMELRQILVFIWTKILSLDKSCQ
VDLVKDGGHTYFIRFLDSLDAYPEQRAMAAFVLAVIVDGHRTGQEACIHAGLIDVCLRHL
QPENPHDAQTEPLLLQWLCLCLGKLWEDFSEAQSLGLQSNAPEILIYLLSEPQPEVQCLH
ISSVLSFASFTIYLLNIWYCQVRASAVFALGNLLDMGSTSSNGVDDDSDDDEKVKAEINV
VRSLLQVSSDGSPLVRCEVAIALTRFALGHNKHLKSVAAEYWKPQTNSLLKSPPSLANIS
SPNNVYSPNNIRQGSSGLASHIGPVLRVGSDSSATCRDGRVSTSSPIATSSIMHGSPQSD
DSSQHSDSGILLRENASNGGLSYTRSRPADSVIYSQYISTMCSVAKDPYPRIATIGRRAL
SLIGVEQVVMKNSRFNSGGAHQGETSAPPSNFGMARSSSWFDMNSGNFSIAFRTPPVSPP
QHDYLTGLRRVCSMEFKPHPMNSPEGLADRLISAAAPSNAELIILPQSTIYNWSCGHFSR
PLLSGSDDNEEAHARREEREQIALDCIAKCQRSSACKMTSQIASWDTRFDSGTKAALLLP
FSPIVIAADENEQIRVWNYDDALPVNSFQNHKLSDRGLSKLLLINELDESLLLAASSDGN
VRIWKNFTQKGGQKLVTAFSSVQGHRAAGRSIVIDWQQQSGCLYASGDMSSILVWDLDKE
QLLSTIQSSGDSAISALSASQVRSGHFAAGFAAGSVRIFDVRSPDRLIYMARPHAPRMEK
VVGIGFQPGLDPYKIVSASQAGDIQFLDVRRAAEPYLTIEAHRGSLTALAVHRHAPVVAS
GSAKQMIKVFSLEGEQLTIIRYQPSFMGQRIGSVNCLSFHPYKSLLAAGAGDNALVSIYA
EENYK
NT seq 4158 nt   +upstreamnt  +downstreamnt
atggcattgggagatctcatggcgtccaggctcgtccactcctcgtcctcgccgtcgcca
tcgacggccgcgcccccggcgccgctgccgaatcaccaccacaaccacgtcacggatgac
ctccccgtcgccaacggcccggagcccaggaatgggctggagcccgccgaggtggacaag
ccggcgcccgtgacgtacctgccccaggtgatggtgctgtgcgagcagcgccacgagggg
atcgacgaggctgcggccgccgccgccgggccctccaccagcggccttgtctccaagtgg
cgcccaaaggaccggatgaagacaggatgtgttgcacttgtattatgtttaaacattagt
gttgatccaccagatgtaattaaaatctccccttgcgcaagaatggagtgctggatagat
ccattttctatggcacctcctaaggcccttgcaaatattggaaaaacattgcactcacag
tatgagcgctggcaacctaaggctcgttacaagcttcagctagatccaactgtggaggaa
gttaaaaagctttgtaatacttgtcgcaaatatgccagatcagagagagtccttttccat
tacaatggccatggtgtaccaaagcctacaactaatggtgagatttgggtgtttaacaag
agttacacacagtatattccacttccaattactgatcttgattcttggctaaaaacacct
tccatttatgtttttgactgctcagcagctggaattattgtgaaagcttttctagagcgc
ctagactggagttctagctcctcttcatcttcgcagaaggattgcattcttcttgctgcc
tgcgaagcacatcaaactcttccccagagtgcagaatttcctgctgatgtgtttacagct
tgcctcacaacacccatcaagatggcattgcactggttttgtaagagatcattactccgt
ggttctatggatcgttctcttattgaccaaattcctggaaggcaaaatgaccgtaaaact
cttcttggagaactgaattggatttttactgccattacagatactattgcatggaatgtg
cttcctcatgatctattccaaaggctattcaggcaagatcttctggttgctagtctcttt
cgtaacttcttgcttgctgagagaatcatgcgatccgcaaattgttctccaatttcttat
ccgttgttaccaccgacccatcaacaccatatgtgggacgcatgggacatggctgctgag
atttgcctttccaagcttcctcagttaattgctgatccaaatgcagagtttcagccgagc
ccttttttcacggaacaactgacggcttttgaagtgtggcttgatcatggttctcaggac
aagaagccccctgaacagttacctatagttcttcaggtcctgcttagtcaatcgcataga
tttagagcgcttgttttgcttggaagatttcttgacatgggaccatgggcagttgatttg
gccctgtctgttggaatatttccttatgtgctcaaactgcttcaaacaagtgcaatggag
ttgcgtcaaattcttgttttcatatggacaaaaattctctctcttgataagtcgtgccag
gttgacttggttaaagatggaggacatacatattttatcagatttcttgacagtttggat
gcttacccagagcagcgtgcaatggccgctttcgttttagcagttattgtggatgggcat
aggacaggtcaagaggcctgtattcatgcaggtcttatagatgtttgtctgagacatctg
caacctgaaaatccccatgatgcacagacagagcctttgcttttgcagtggctttgttta
tgccttggcaaactctgggaagatttttctgaggctcagtcacttggtctgcaatcaaat
gcaccagaaattttaatttatttgttatcggagccacaacctgaggtacaatgccttcat
atttcatctgttctttcatttgcttccttcacaatatatttattaaatatttggtattgc
caggtcagagcttctgctgtttttgcacttgggaatctcctggatatgggatcaacatca
tcaaatggtgttgatgatgattctgatgatgatgaaaaagtaaaagctgaaataaatgtc
gttcgaagccttctgcaggtctcttcagatggtagcccccttgttagatgtgaggttgct
atagcgcttactcgttttgcattgggtcacaataagcatctcaaatctgttgctgctgag
tattggaaacctcaaaccaattcattgctgaagtcaccaccatcactggccaatataagt
agtccaaacaatgtctacagtcccaacaacattcgacaaggcagcagtggccttgcttct
catattggtcctgtgctaagggttggcagtgatagcagtgccacttgtcgtgatggaagg
gtttctacgagcagcccgattgcaacaagtagcatcatgcatggctctccccagtcagat
gattcttcccaacactctgattcaggcatattactgagagagaatgcaagtaatggtggc
ctcagctatactagatcgaggcctgctgacagtgtcatttattctcaatatatatcaact
atgtgttctgttgctaaagatccttacccaagaattgcaactattggccggagagcactg
tcccttataggtgttgagcaagtggtcatgaaaaacagtagatttaacagtggaggtgca
catcaaggagagacatctgcacctccatcaaactttggaatggcacgctcttcttcctgg
tttgatatgaattctggaaacttctcaattgcatttaggacgcctcctgttagcccccct
caacatgattatcttacaggattacgccgagtatgttcaatggagttcaaaccacatcct
atgaattctcctgagggcttagctgatcgccttatctctgctgcggctcccagtaatgct
gaactaatcatacttccccaatcaacaatttacaactggagttgtggacacttctctagg
ccacttttatctggttctgatgataacgaagaagcccatgctagaagagaagagagagaa
caaattgcactagattgcattgctaagtgccagcgatcatcagcttgcaagatgacaagc
caaattgctagttgggatacaaggtttgattcaggtacaaaagcagcattattgttgcca
ttttctccaatcgtcatcgcagctgatgaaaatgaacaaataagagtgtggaactacgat
gatgcactaccagtgaactcttttcaaaaccataaattgtccgacagagggctatcaaaa
ctcttgcttatcaatgagcttgatgagagcttgcttttagctgcctcaagtgatggaaat
gtacgtatatggaaaaattttactcaaaagggaggacaaaaacttgtaactgctttctca
tcggttcagggtcatcgagctgctggtcgcagtattgtgatcgattggcagcagcaatct
ggttgcctgtatgcatctggtgacatgtcttccatcttggtatgggatcttgacaaggaa
caacttctaagcaccattcagtcatctggtgacagtgcaatttctgccctgtctgcatct
caggtccgctctggacactttgctgctggttttgctgctggttctgtaaggatatttgat
gttcgctctcctgataggctgatctatatggcaaggccacatgccccaagaatggaaaag
gttgtgggcatagggtttcagcctgggcttgatccatacaagattgtaagtgcatctcaa
gctggagacattcagtttctcgatgttagaagggcagcagaaccctacctgactattgag
gcacacaggggttcacttactgctttagctgttcatcggcatgccccagttgttgctagt
ggctcagccaagcagatgattaaagtgttcagtcttgaaggagagcagttgacgataatt
cgctaccagccatcatttatgggccaaagaataggcagtgtaaactgcctttctttccac
ccgtacaaatcactcttggccgctggtgctggtgataatgctcttgtctctatctacgcc
gaggaaaattacaagtaa

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