Panicum virgatum (switchgrass): 120663432
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Entry
120663432 CDS
T07260
Name
(RefSeq) protein SCARECROW-like
KO
K27742
protein SCARECROW
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120663432
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Other transcription factors
GRAS
120663432
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GFIT
Motif
Pfam:
GRAS
DUF5812
Motif
Other DBs
NCBI-GeneID:
120663432
NCBI-ProteinID:
XP_039798181
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All DBs
Position
3N:592415..596186
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AA seq
661 aa
AA seq
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MGSSSLLLFPSSSSAAPPPHSAAYSHATTSSHSLLPPLPSSQDHLLLHYLHHHLDQQHQE
SAAAAAMVRKRPAPDMDLPPPRRHVTGDLSDVTAAAGAQPHQSAASAQLPALPTQLQLPA
FQQHHHHHAHAEVDVPHAPPPAPAKVAASTTAWVDGIIRDIIGSSGGAGVSITQLIHNVR
EIIHPCNPGLASLLELRLRSLLNADPAPPPLPHPPALLHGSTPPAAAPTVPPALPPPPPL
PVPDKRRHEPQQEEPNPSPQSPKAPTAEETAAAAKERKEEQRRKQRDEEGLHLLTLLLQC
AESVNADNLDDAHLTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPAAS
PAAARLHGRVAAAFQVFNGISPLVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPG
LFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCAVAEKAGNVDPE
KLGVTRREAVAVHWLHHSLYDVTGNDSNTLWLIQRLAPKVVTMVEQDLSHSGSFLARFVE
AIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKLGSWREKLA
QSGFRSASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWRPIQTPC
R
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgggctcctcgtccctcctgctcttcccctcgtcctcctccgccgcgccaccccctcac
tctgctgcttattcccacgccaccacctcctcccactccttattgccgccgctcccctcc
tcccaggaccacctcctcctccactacctccaccaccacctagaccagcagcaccaggaa
tccgccgccgccgccgccatggtccgcaagcgcccggcgcccgacatggaccttcccccg
ccgcgccgccacgtcacgggcgacctctccgacgtcaccgccgccgctggtgcgcagccg
catcagtcggcagctagcgcgcagctgcccgcgctgcccacccagctccagctccccgcg
ttccagcagcaccaccaccaccacgcgcacgcggaggtggacgtcccccacgcgcccccg
cctgcgccggccaaggtggcggcgtccaccacggcgtgggtggacggcatcatccgcgac
atcatcggcagcagcggcggcgccggggtctccatcacgcagctcatccacaacgtccgc
gagatcatccacccctgcaaccccggcctcgcctccctcctcgagctccgcctccgctcc
ctcctcaacgccgaccccgccccgccgccgctcccgcatcctcccgccctcctgcacggc
agcaccccgcccgccgccgccccaacagtgccccccgctcttcctccccctcccccgctt
ccggttccagacaagcgccgccacgagccgcagcaggaggagccgaacccgtcgccgcag
tcgcccaaggctccgacggcggaggagactgccgcggccgccaaggagcggaaggaagag
cagcggcggaagcagcgcgacgaggagggcctccacctgctgacgctgctgctgcagtgc
gccgagtcggtgaacgcggacaacctcgacgacgcgcacctgacgctgctggagatcgcg
gagctcgccacgcccttcggcacctccacgcagcgcgtcgccgcctacttcgcggaggcc
atgtccgcgcgcctcgtcagctcgtgcctcggcctgtacgcgccgctgccggcggcgtcc
cccgcggcggcgcgcctgcacggccgcgtcgccgccgcgttccaggtgttcaacggcatc
agccccctggtgaagttctcgcacttcacggcgaaccaggccatccaggaggcattcgag
cgggaggagcgcgtccacatcatcgacctcgacatcatgcaggggctgcagtggccgggc
ctcttccacatcctcgcctcccgccccggcggcccccccagggtcaggctcaccggcctc
ggcgcgtccatggaggcgctcgaggccacggggaagcgcctctccgacttcgccgacacg
ctcggcctgccattcgagttctgcgccgtcgcggagaaggccggcaatgtcgacccggag
aagctgggcgtcacgcggcgcgaggccgtcgccgtccattggctccaccactcgctctac
gacgtcaccggcaacgactccaacacgctctggctcatccaaaggctggcccccaaggtg
gtgacaatggtggagcaggacctcagccactcgggctccttcctggcgcgcttcgtggag
gccatccactactactcggcgctgtttgactcgctggacgcgagctacggcgaggacagc
ccggagcggcacgtcgtggagcagcagctcctatcgagggagatccgcaacgtgctcgcc
gtgggcgggccggcgcgcaccggcgacgtcaagttagggagctggcgcgagaagctcgca
cagtcggggttccgctcggcgtcgctcgccggcagcgcggcggcgcaggcgtcgctgctg
ctcggcatgttcccctccgacgggtacacgctcgtcgaggagaatggtgctctcaagctc
gggtggaaggatctttgcctgctcactgcatctgcttggcgcccgattcagaccccatgc
cgttaa
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