Panicum virgatum (switchgrass): 120663466
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Entry
120663466 CDS
T07260
Name
(RefSeq) regulation of nuclear pre-mRNA domain-containing protein 2-like
KO
K15559
regulator of Ty1 transposition protein 103
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120663466
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120663466
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
CID
CTK3
DUF3490
TEX13
Motif
Other DBs
NCBI-GeneID:
120663466
NCBI-ProteinID:
XP_039798221
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Position
3N:complement(812658..819816)
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AA seq
591 aa
AA seq
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MAGAKADVDAETGDGGGAAGGAGGGGGGSFSEHRLVEKLSKLNSSAASIQTLSQWCIFHR
KRAKRVVDTWEKQFNSATKDKKVSFLYLSNDILQNSKRKGGDFVNEFWRVLPRSLKHVYE
NGGEEGKKVVARLIGIWDERKVFGTRIESLKDGIFGDNPHILDKNGNSSNPSSNPPSNSK
VSRKDSGTTVKKLTVGGMPEKIVTAYQSVLDQHFDEDTVLNKCKSTVGVLERINKDINDA
STNGNQPASTLISDLQEQEMTLKQCIEQLESVDAARISLINQLKKALSEQESKSMVLRSQ
LQVARAETERVIQLRQQLGGALSTSATQSSPSPLMITPPEQTAGTVQGSGVRSTPPQSQP
LTPATSLRPTFSAVGDESKRSAAAMADKLASLSAPVLSSILSSLAAEQAASINGGSPSGE
LSGGPPGFQIEKRPRLEKQAGDMGASPFFGQAPQVQQQMGAVPTTLGGTQPRTPVPFPPP
PPPLPSLLPPLLQQFGQNTGGMIGMGGPFGMMAGSMPPPPPLSNILPAGFPGPSGPPPPP
PLPPAQSQPQQQQQSPQAPQQSPTSTGFFQSSGMSFFPPVQVQQSPSAQRQ
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcgaaggcggatgtagacgcggaaacgggggacggcggcggcgccgcaggt
ggcgccggcggcgggggaggcggctccttcagcgagcacaggctggtcgagaagctcagc
aagctcaacagctcagcggcgagtattcagacactttcacaatggtgcatttttcaccgc
aagagggccaaaagggttgtagacacatgggagaagcagtttaatagtgcaacaaaggat
aagaaagtatcattcctgtatctatcgaatgatatcctgcaaaacagcaaacgcaaggga
ggagactttgtgaatgagttctggagggttctacctagatcactgaaacatgtctatgaa
aatgggggagaagaaggaaagaaagtggtggcaagattaataggaatttgggatgaacgt
aaggtttttgggactcgtattgaaagtctgaaagatggcatttttggtgacaaccctcat
atattggataagaacgggaatagttcaaatcctagctctaaccccccttcaaattccaaa
gtttcacggaaggattctggtacgacagtaaaaaaacttactgttggtgggatgcctgaa
aagattgtaactgcataccaatcggtccttgatcaacattttgatgaagacacagtttta
aacaaatgtaagagtactgttggtgttttggagaggataaataaagatataaacgatgct
agcaccaatggtaatcagccagcatcaacattgatttccgaccttcaagaacaagaaatg
accctaaagcagtgcatcgaacaacttgaaagtgtagatgcggcgaggatatccctgatc
aatcaattaaaaaaagctctcagcgaacaggagtcaaagtcaatggttcttcgcagccag
ttgcaagttgctcgagcagagactgaacgtgtcattcaacttagacaacaactgggtggt
gcccttagcacaagcgccacacaatctagtcctagtccgctcatgattactccaccagag
caaacagctggtacggtgcaaggttcaggagtaaggtcgacacctccacagtcacagcca
ctgactccagcaacctcacttcggcctacattcagtgcagtgggtgacgagtccaagagg
tcggcagcagctatggcagataagcttgcatctttgtcagcacctgtgcttagctccatt
ctctcatctcttgccgctgagcaagctgcttccataaatggtggatcaccttctggagaa
ttatctggaggaccaccaggcttccagattgaaaagaggcctaggcttgagaagcaggct
ggtgatatgggtgcttctcccttttttgggcaagcgccacaggtgcaacaacagatggga
gcagtgcctactactcttggaggcacgcaaccacgaacgccagttccatttccaccacct
ccaccgccattgccatctctattgccaccacttctacaacaatttggtcaaaatactgga
ggaatgatcggaatgggaggacctttcgggatgatggcaggctctatgccacctccacct
cctttgtccaacattctgccggcaggtttcccaggaccaagcgggccacctcccccacct
ccacttccacccgctcagagccagccccagcagcagcagcagtctcctcaggcaccacag
caatcaccgacatcaactggattctttcaatcatcaggcatgagcttctttcctccggtg
caggtgcagcaatctccatctgcccaacgacagtga
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