Panicum virgatum (switchgrass): 120663474
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Entry
120663474 CDS
T07260
Name
(RefSeq) alpha-L-arabinofuranosidase 1-like isoform X1
KO
K01209
alpha-L-arabinofuranosidase [EC:
3.2.1.55
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00520
Amino sugar and nucleotide sugar metabolism
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00520 Amino sugar and nucleotide sugar metabolism
120663474
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.55 non-reducing end alpha-L-arabinofuranosidase
120663474
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GFIT
Motif
Pfam:
ASD1_dom
Alpha-L-AF_C
Motif
Other DBs
NCBI-GeneID:
120663474
NCBI-ProteinID:
XP_039798229
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Position
3N:complement(876257..881930)
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AA seq
531 aa
AA seq
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MEVLCDNCPPGGVGIYNPGFWGMNIEEGKTYNLVMYARSPDSMELIVSLTCSRPSGALKN
LASASTRHINLSNWTKVELQLLAQGTCRTARLELTTSKRGVLWLDQVSLMPSDTYKGHGF
RKDLTYMLLDLKPRFLRFPGGCFVEGNWLSNAFRWKETTGPWEERPGHYGDVWNYWTDDG
LGYYEFLQLAEDLDALPIWVFNAGISHNDAVNSSMILPFVKDAMDSLEFARGNAESTWGS
VRVAMGHPDPFPLKYVAIGNENCGYGSYRGNYMAFYSAIRKVYPDIQIISNCDGSSKALD
TPADFYEYHNYTDTAAKLFIAKNQFDKTSRSGPKVFISEYAVRDGHNGSLLASLAEAAFL
TGVEKNSDYIQMASYAPMFVNEKDRTWSPDAIVFNSWQQYGTPSYWMQTFFRESSGALIH
PVTITSRYSDLLAASAITWQDNEKSFLRVKIVNFGSGAVNLTIRATGLQVGVNTKRSRVT
ILTSGNVLDENSFSNPEKILPVMKGLPNAAEAMHSFLSPYSFTSFDLALDE
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggaagttctctgtgacaattgtccacctggtggagttggcatttacaacccaggattc
tggggcatgaacatagaagaaggcaaaacctataatctagtcatgtatgccagatctcct
gactctatggagttgattgtttcactcacatgttcaagaccttctggcgcattgaaaaac
cttgcatcagcttcgacacgacatatcaatttgtctaactggacaaaggtagaactgcaa
ctgttggctcaaggaacatgcagaactgcaagacttgaactaacaacttccaaaagagga
gtattatggcttgaccaagtgtcactcatgccttcagatacatacaagggccacggtttc
cgaaaggatctcacatatatgcttctggatttgaaaccacgattcctacgttttcctggt
ggttgctttgttgaaggcaactggttgagcaatgctttcagatggaaggaaaccactggt
ccatgggaagagaggcctgggcactatggagatgtttggaattactggacagatgatggc
cttggctattatgagtttctccagctcgcagaagacttggacgctcttccaatttgggtc
ttcaatgctggtatcagccacaacgatgcagttaacagcagtatgattttaccttttgtt
aaggatgcaatggatagtcttgagtttgcaagggggaatgcagaatcgacatggggctct
gttagagtcgcaatgggtcatcctgacccatttccgctgaagtacgtggcaattggaaat
gagaattgtggatacggatcataccgaggaaactacatggcattttactctgctataagg
aaggtatatccagacatacaaataatttcaaactgtgatggctcatctaaggcactcgac
actcctgcggatttttatgagtatcataactatactgacactgctgctaaattgtttatt
gcgaagaaccaattcgacaagacatcacgtagtgggcctaaggtttttatcagcgaatat
gctgtcagagatggccataatggaagcctccttgcttcacttgccgaagctgcattcctt
acaggagtagaaaaaaatagtgattacattcagatggccagctacgctcctatgttcgta
aatgaaaaggacagaacctggagcccagatgcgatagtcttcaactcctggcaacaatac
ggaacccctagttactggatgcagacatttttccgtgaatcaagtggtgctctgattcat
ccggttacaatcacatccaggtactctgacttgttggcagcatccgccattacgtggcag
gacaatgaaaagagcttcttgagggtaaagattgtaaactttggatctggtgctgtaaac
cttactatacgtgcaactggacttcaggttggtgtcaatacaaagagatcaagagtcact
attctgacgtctggcaatgtgctggatgagaattcgttcagcaacccagaaaaaatcctt
cctgtcatgaaagggctaccgaatgcagcagaagccatgcatagcttcctgagcccttac
tcgttcacctcattcgatctagctttggatgaataa
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