Panicum virgatum (switchgrass): 120663498
Help
Entry
120663498 CDS
T07260
Name
(RefSeq) hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform X1
KO
K01640
hydroxymethylglutaryl-CoA lyase [EC:
4.1.3.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00280
Valine, leucine and isoleucine degradation
pvir00650
Butanoate metabolism
pvir01100
Metabolic pathways
pvir04146
Peroxisome
Module
pvir_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
120663498
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
120663498
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120663498
Enzymes [BR:
pvir01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.4 hydroxymethylglutaryl-CoA lyase
120663498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMGL-like
Sha_B_N
Motif
Other DBs
NCBI-GeneID:
120663498
NCBI-ProteinID:
XP_039798269
LinkDB
All DBs
Position
3N:complement(1054541..1057473)
Genome browser
AA seq
430 aa
AA seq
DB search
MSSLEEPLGLGDLPKLSINRLGSFSQPSAYRRAAADDRNTREYNITCNGGTPMVFHANSH
AWHQQCRQADSSCDAVELRDLPRKVMWDLPSFVKIVEVGPRDGLQNEKGNVPTSVKIQLI
HKLVAAGLSVVEATSFVSPKWVPQLADAKEVLKGIQQMPNVRYPVLTPNLRGFEAAVAAG
AKEIAVFASASESFSKSNINCTIDESLVRYRDVTAAAKKHGLLIRGYVSCVIGCPVEGAI
DPSKVAYVAKELYNMGCSEISLGDTIGVGTPGTECSCQCLPFALSFFDWYVETDPGSNSL
RHPCSFFLVVLSVSGSVVAMLEAVMSFVPADKIAVHFHDTYGQALANILVSLQMGISIVD
SSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMEAGDYISKHLGRPLGSK
TAAALRKLTT
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcctcgaggagccgcttggtcttggagacctgccgaagttgagtattaacaga
cttggaagcttctcccagccaagtgcttatcgtagggcagcggctgatgaccgcaacact
cgcgagtacaacatcacctgcaatggtggcacgccgatggttttccatgccaattcccat
gcatggcatcagcaatgccgtcaggccgattcctcatgtgatgcggtggagcttagagat
ctccctcggaaggttatgtgggatctgccaagctttgtgaagattgttgaagttggaccc
cgagacggcctgcaaaacgaaaagggcaatgtaccaacatctgtaaagatacagctgata
cacaaattagtggctgcaggtctatcagtagttgaagccacaagttttgtatccccaaaa
tgggtgccacagctagctgatgcaaaggaagtcctcaaaggaatccagcagatgccaaat
gtacggtatcctgtgttaactcctaacctcagaggatttgaggctgctgttgcagctggt
gcaaaggaaattgcggtttttgcgtctgcctctgaatccttctctaagtcgaacattaac
tgtaccattgacgaaagccttgttcggtaccgtgatgttactgctgctgccaagaaacat
ggactccttatccgtgggtatgtttcgtgtgtgattggttgccctgttgaaggtgcaatc
gatccatcaaaggtggcatatgtagcgaaggagctttataacatgggctgctcagagatt
tcacttggcgatacaattggtgttggtacaccaggtactgaatgttcttgccaatgctta
ccctttgctctcagtttttttgattggtatgttgaaactgatccaggcagcaactcattg
agacatccctgttccttcttccttgttgtgttgtctgtttcaggtagtgtagttgctatg
cttgaagctgtcatgtcctttgttccagcggacaagattgccgttcatttccatgataca
tacggccaggcccttgccaatatcctagtctcccttcaaatggggatcagcatagtagac
tcctcagtttcaggcctcggaggctgcccctatgcaaagggcgccaccggcaatgtcgcc
actgaggatgtcgtgtacatgctccatggcctggggatagagaccaacgtcgacctcaac
aagctcatggaggctggcgattacatctccaagcatctaggaaggccactgggctccaag
actgctgccgctctgcgcaagctaaccacctga
DBGET
integrated database retrieval system
