KEGG   Panicum virgatum (switchgrass): 120663572
Entry
120663572         CDS       T07260                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pvir03036]
    120663572
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120663572
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    120663572
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     120663572
SSDB
Motif
Pfam: MMS19_N MMS19_C Cyt_b-c1_8
Other DBs
NCBI-GeneID: 120663572
NCBI-ProteinID: XP_039798373
LinkDB
Position
2K:6108945..6122427
AA seq 1141 aa
MARVPPEEWVPHVEAYVDVSRPAAQHSASVDALAAMVNKDRLTLFDLVSKMEMYLTTTDH
IVRSRGILLLGEILSQISFKWLDVSTITILSDFFISRLSDWQAIRGALVGCLALLHRKQG
VGCIVIADVKRLVESFSHNVPVQSLATADRKLCFQILSCILDRYPEAIKTMDGGQLYWIC
EAIDEEKDPECLKLSFHVVEVVMKLFPDPSGLAAQFACEIFEILSKYFPVYFTHGAGDDL
NATRDDLSRALMHAFCSTPYFEPFAIPLLLDKLSSSLPLAKLESLKYLDNCIRFYGAARH
ASAVWLKLKEVIFSLSPEQLLLTTGSPKDAEKNKNQMVSEALNCLKTAITYIDSPDKDLF
INLILLDEDIVNKIHSISRAEKSILSSLEDLAQVHALGSVISILMESSTYFCTRVLQEHL
THLVDVLGTSTDYESQQLNTCNGSYSAAINFGALYLCVQMLTSCREVALVSYAECSSIKL
AKESWWLILEKKLDQLIHLLGSFLTLDSQSEQSMFRQEYVACAVKGLLTLAIFPEQCSTL
LTNAFEDILAMLTSVITSKFENVDLWRLSLKALTSIGSSIVKFNASQKEVIYCRTVVDKI
VSLLESYDGSMPLSLRLEASYEVGTAGLNYMLPVARSLEGAVVTSISKANGRMECAEYVA
HLFECYSSRILPWLFTYGGINELALSFAMHLLDEIKDLSMLDRISSQVLLDSLMTGMKLL
VGVCTEEQQTLIVQKAYSMVSSVLPLPPKSMTHCLLAVDELVPSHSVQETALIGMLSSVI
VGLRLQTPVPDMIVMINLFTVFLLNGKLPAAYALASIFNKYLHNPEFSHENQLDKILDDI
LERCFTTVLDNSYSKISHSSVDTSNEANFLYVSSGNVPSKIDILSGLAWIGKGLLMRGDE
KIKDISMFLLKCLCSGETVASTPAHEKESCGSDSSDTSIATSAAGAFNIMMSDSEVCLNK
KFHARIKPLYKQRFFSIMTPIFLSKIKEATSMTTKLALYSAFGHIISNAPVPAVITEAHQ
ILLVIVDSLAKLSVDIQDKDLVYNLLLVLSGMLMDEKGKECILDNIHITISVLTQLVSYP
HMMVVRETALQCLVAFSTFPHSKIFPMRLKVLQAAIKALDDKKRAVRQEAVRCRQTWQSF
A
NT seq 3426 nt   +upstreamnt  +downstreamnt
atggcgagggtcccccccgaggagtgggttccccacgtagaggcctacgtcgacgtctcc
cgccccgccgcgcaacactctgccagtgtggatgcgcttgcagccatggtgaacaaggac
aggctgaccctcttcgatttggtgtccaagatggagatgtatttgacgacgacagaccac
attgtgagatcaagagggatactgcttctgggggaaatactgtctcaaatttcatttaaa
tggttagatgtcagtaccatcacaattttgtcagatttctttatatcaagattgtcagat
tggcaagcaatacggggagcacttgttggttgcctggcactattgcacagaaaacaaggt
gttggttgtatcgtgattgctgatgtcaaaagacttgttgagtctttctcacataatgtc
ccagtgcaatcacttgcaactgcagatcgcaagctgtgcttccaaattctgagctgcata
ctggatcgataccctgaagccatcaaaacaatggacggtgggcagctgtactggatctgt
gaagcaattgatgaagaaaaggacccagaatgcttgaagctttcttttcatgtagtggaa
gttgtcatgaagctatttccagatccgtctggtttagcagcacaatttgcatgcgagatt
tttgagattctgagcaagtattttcctgtctacttcacacatggagcaggtgatgattta
aatgctacaagggatgacctttccagagcattgatgcatgccttttgttccaccccctat
tttgagccatttgccatccctttgcttcttgacaagctttcttcctctcttccgttagca
aagcttgaatcattgaaatatctggacaattgcattcgcttctatggagctgctagacat
gcatcggctgtgtggcttaagttgaaagaagtgatttttagcctttctccagagcaactt
ctattaacaacagggtctccaaaagatgcagagaagaataagaatcaaatggtctcagag
gctctgaattgtttgaagactgctattacgtatattgattctccagataaagatcttttc
atcaatttgatattgttggatgaggacattgtgaataagatccattctatatcaagggca
gaaaagtccatattgagttcattggaagatttggcccaagtacatgcacttggaagtgtc
atttctattcttatggaatcatctacatatttctgtactagagttcttcaagagcatctt
acacacttggtggatgttttgggaacctcaactgactatgaatctcagcagttgaatact
tgtaatggatcatattctgctgctatcaactttggagcactctatttatgtgttcaaatg
cttacatcctgtagagaagtggctttggtatcttatgcagagtgttcttctattaaatta
gcaaaggagtcctggtggcttatcttagagaaaaagttggatcagctaatccatctcctt
ggatcatttttaactttagattctcaatctgagcagtcaatgttcagacaagaatatgtt
gcatgtgctgtgaagggcttgctaacactagcaatattcccggaacagtgctcaacttta
ctgacaaatgcttttgaagatattctggctatgcttacctcggtgattacaagcaagttt
gaaaatgtagatttatggagattgtcattgaaagcactgactagcattggttcatctatc
gtcaagttcaatgcttctcaaaaggaagtgatttactgcagaacagtagtcgacaagatt
gtttctttgcttgaatcttatgatggttcgatgcctctcagcctaagacttgaagcaagt
tatgaagttggaacggctgggttgaactatatgttaccggttgctagatcacttgaagga
gctgttgtcactagtatttctaaggctaacggaagaatggaatgtgctgaatatgtagcc
catttatttgagtgctactctagtcggatccttccttggttgtttacttatggtggtatc
aatgaacttgctttgagctttgcaatgcatctcttggatgagataaaggacttatctatg
ttagatagaatcagttcacaggtcctccttgactcactgatgacaggaatgaagctttta
gttggagtctgtacagaggagcaacaaacactgattgtgcagaaagcttatagcatggta
tcatcagtgctcccactcccaccgaaatcaatgacacactgtcttttggctgtagacgag
ttagttccttcacattctgttcaagaaacagctctgatcggcatgctttcatcggttata
gttggccttcggcttcaaacacctgttccagatatgattgtgatgatcaacctctttaca
gtctttctactgaatgggaaactgccagctgcttatgcattagcttctattttcaataag
tatctacacaacccagagttttcacatgagaatcaactggataaaatactcgatgatatt
cttgagaggtgtttcacaaccgtattagacaacagctactcaaagatatcccactcttct
gttgacacttcaaatgaagctaatttcttatacgtttcctctggaaacgtaccttcaaag
attgatatcttgtctggcttagcctggatcggcaaaggattacttatgagaggagatgag
aagattaaggacatttcaatgtttctgcttaagtgtctatgctcaggcgaaactgtggct
agtactccagctcacgagaaagaatcttgtggcagtgattcatcagatacttctattgca
acatccgcagctggtgcattcaatataatgatgagtgattcagaagtctgcctaaataaa
aaatttcatgcaagaataaagccattatataagcagcgtttcttctcaataatgacaccg
atcttcctctctaaaatcaaggaagcaacttcaatgacaacaaagttggcattgtacagt
gcttttgggcatatcatttcgaatgctccagtaccagcagttataactgaagctcatcag
attttacttgtgatagttgatagcttagctaaattgagtgtggatattcaggacaaggat
ttggtgtacaatttgttacttgtcctgtctggaatgttaatggatgaaaagggcaaagag
tgcattctggacaatatccacatcaccatcagtgttcttacccaacttgtttcctatcct
cacatgatggttgttcgggagacagcgctacaatgtttagtagccttttcgacttttcct
cactcaaaaatctttcctatgcggctaaaggttctacaagcagcaatcaaggctctcgat
gataagaaaagggctgttcgtcaagaggctgttcggtgtcgacaaacatggcagtcgttt
gcttaa

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