KEGG   Panicum virgatum (switchgrass): 120663607
Entry
120663607         CDS       T07260                                 
Name
(RefSeq) signal recognition particle 54 kDa protein, chloroplastic-like isoform X1
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03060  Protein export
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    120663607
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pvir02044]
    120663607
Enzymes [BR:pvir01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     120663607
Secretion system [BR:pvir02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   120663607
  Eukaryotic Sec-SRP protein
   120663607
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N Zeta_toxin CbiA AAA_22 ParA AAA_17 cobW ArsA_ATPase nSTAND3 APS_kinase 6PF2K AAA_18 AAA_16 AAA_33 DUF6779 AAA_31 PIF1 AAA_30 MMR_HSR1 DUF4398 ResIII NPHP3_N ATP_bind_1 AAA_25 NTPase_1 Thymidylate_kin AAA ATPase AAA_19
Other DBs
NCBI-GeneID: 120663607
NCBI-ProteinID: XP_039798398
LinkDB
Position
3N:complement(1929174..1936001)
AA seq 565 aa
MDLDLEGCPWFLWLSFLQPKPSHPEGPTQMLQIGDAKPAQFNWSRNFRPSNQAMASICFF
PTSPQKSSSDLIDSFECPGWEVHCHDQINQLGCEHKLYEDFSPCPNVLTKENISEPMRDI
RRALLEADVSLPVVRRFVSSVSEKALGADTIRGVRPEQQLVKIVHDELVQLMGGEVSDLV
FTKSGPTVILLAGLQGVGKTTVCAKLAFYLKKLGKSCMLVAADVYRPAAIDQLTILGKQV
GVPVYSEGTEAKPPQITKNAMEEAKSKNIDAIVVDTAGRLQIDKAMMDELKEVKKAVNPT
EVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGRPIKFVGR
GERLEDLELFYPDRMAQRVLGMGDVLSFVEKAQEVMRQEEAVELQKKIMSAKFDFNDFLK
QSQNVAKMGSMSRVIGMIPGMNKVTPAQIREAEKRLAFVESMINAMTAEEREKPELLAES
RERRIRVAEESGKTEQEVSQLVAQLFQMRAQMQKLMGMVQGQEAIAGMGDLMDSLKAEEK
APPGTARRKRRNSKPKLRDLDAVLS
NT seq 1698 nt   +upstreamnt  +downstreamnt
atggacttggatttggaaggatgcccatggtttttgtggcttagttttttgcaaccaaag
ccatctcatcctgagggcccaacccagatgctgcagattggagatgccaagcccgcccaa
ttcaattggtcgcgtaactttaggccaagcaaccaggcaatggcctccatttgcttcttt
cctacctctccacaaaaaagctcttctgatcttatcgatagctttgagtgcccagggtgg
gaggtccattgccatgaccaaataaatcagcttggatgtgagcacaaactgtacgaggat
ttttctccctgccctaatgtgctaacaaaggaaaatatttccgaaccaatgcgggacatt
agaagagcacttctggaagcagatgttagtttgccagttgtgagacgttttgtttcatct
gttagtgaaaaggctttaggtgcagatactataagaggagttcgaccagaacagcaacta
gtgaagattgttcatgatgaacttgtacagctgatgggtggagaagtatctgatctagta
tttacaaaaagtggcccaacagttatcttactggcaggtctacaaggtgttgggaagacc
actgtttgtgcaaagcttgcattctatttgaagaaactggggaagagttgtatgctggtt
gctgcagatgtttacaggcctgctgccattgatcaacttactatattgggtaaacaggtg
ggtgtaccagtttactcagaaggaacggaagccaaacctccacaaataaccaagaatgct
atggaagaggcgaaaagtaagaatattgatgccattgtggtggatactgctggaagactg
cagattgataaagcaatgatggatgaactgaaagaagtgaagaaagcagttaatcctact
gaagtactgcttgtcgttgatgccatgactggccaagaagctgcagcacttgtcaccact
ttcaatattgagattggtatcactggcgctatactgaccaaactggatggtgattccagg
ggtggagcagcactaagtgttaaagaggtatctggaaggcccatcaaatttgtaggacga
ggggaacgactggaggaccttgaacttttctatcctgatcgcatggcgcaacgagttttg
ggaatgggagatgtactttcatttgttgaaaaagcacaagaagttatgcggcaagaagaa
gctgtagaattacagaagaaaattatgagtgcaaaattcgacttcaatgacttcttaaag
caatctcaaaatgttgcgaaaatgggctccatgagccgagtgattggaatgattcccggc
atgaacaaggttactcctgcacaaattcgagaagctgagaaaagacttgcattcgtcgag
tcaatgattaatgcaatgactgccgaggaaagagagaagccagagttgcttgccgaatca
cgcgagaggaggataagagtggctgaggagtctggaaagactgaacaagaggtgagccaa
ctggttgctcagcttttccaaatgcgcgctcagatgcagaaattgatgggtatggtgcaa
ggacaagaagcaatagcaggcatgggagacctcatggactcacttaaagctgaagaaaag
gcaccacctggcaccgcgcggcggaagaggaggaacagcaagccgaaactgagggacctg
gatgcagttttgagctag

DBGET integrated database retrieval system