Panicum virgatum (switchgrass): 120663612
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Entry
120663612 CDS
T07260
Name
(RefSeq) replication protein A 32 kDa subunit A-like
KO
K10739
replication factor A2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
pvir03420
Nucleotide excision repair
pvir03430
Mismatch repair
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120663612
03420 Nucleotide excision repair
120663612
03430 Mismatch repair
120663612
03440 Homologous recombination
120663612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120663612
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120663612
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120663612
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120663612
MMR (mismatch excision repair)
120663612
DSBR (double strand breaks repair)
HR (homologous recombination)
120663612
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPA_C
RMI2
tRNA_anti-codon
Motif
Other DBs
NCBI-GeneID:
120663612
NCBI-ProteinID:
XP_039798409
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All DBs
Position
3N:1986313..1988929
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AA seq
278 aa
AA seq
DB search
MMPSSQPDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQIADAHQSGTGEKGAPFV
VDGVETANIRLVGMVNGKAERTTDVSFTLDDGTGRLDFIRWVNDASDSSETAAIQNGMYV
SVIGSLKGLQERKHATAFAIRPITDFNEVTLHFIQCVRMHVENTKLKVGSPARTSSSMGA
SVSNGFSESSTPASLKSNPAPVTSGASGTDGTDLNTQVLNIFREPANIESEHGVHIDEII
KRFKLPENKIREAIMYNADVGHIYSTIDDFHYKSAFTD
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgatgccctcgagccagcccgatttttcgccgtcgcagttcacctcctcccagaatgcc
gccgccgactccaccaccccttccaagatgcggggcgcatcaagcactatgccactcacc
gtcaagcagatcgccgacgcgcatcaatctggcaccggcgagaagggcgctcccttcgtc
gtcgatggcgtagagacggctaatattcgacttgtggggatggtcaatggcaaagcagag
cggacgacagatgtgtcattcacgctcgatgacggcactggtcgcctcgatttcattaga
tgggtgaatgacgcttcagattcgtctgaaactgctgctattcagaatggtatgtatgtc
tcggtgattggtagtctcaagggacttcaagagaggaagcacgctactgctttcgcaatc
aggcctataactgatttcaatgaggttacgctgcatttcattcaatgtgttcggatgcac
gtagagaatactaaattaaaggtaggcagtcctgcacgaaccagttcttctatgggagca
tcagtttcaaatggattcagtgaatcaagcacaccagcatcattgaaatctaatccagca
ccggtgaccagtggtgcaagtggaaccgacgggactgatttaaacacacaggtgctgaat
attttccgcgaaccagccaacattgagagtgagcatggggtgcacattgatgaaataatc
aagcggttcaaattgcctgagaataagataagggaggcaattatgtataatgcggatgtc
gggcatatttactcaacaatcgatgattttcactacaagtcagctttcaccgactga
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