KEGG   Panicum virgatum (switchgrass): 120663666
Entry
120663666         CDS       T07260                                 
Name
(RefSeq) WD repeat-containing protein 48-like
  KO
K15361  WD repeat-containing protein 48
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    120663666
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120663666
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     120663666
SSDB
Motif
Pfam: WD40 WD40_Prp19 DUF3337 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_SPT8 Beta-prop_SCAP NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF4 RAWUL WD40_RFWD3 Beta-prop_WDR75_2nd WD_LRWD1 WD40_like
Other DBs
NCBI-GeneID: 120663666
NCBI-ProteinID: XP_039798484
LinkDB
Position
3N:complement(2504126..2513290)
AA seq 754 aa
MHRVGSAGNTAGSTRPRKEKRFTYVLNDADSKKHCAGINCLAYLNGSAFSRSDYLFSGSR
DGTLKRWELNNGDASFSATFESHVDWVNDAIIVGEKLVSCSSDTTLKVWNCFSEGACTRT
LRQHSDYVICLAAAEKNSNIVASGGLGGEVFIWDIDAALAPVAKSVDAKEDEVPNGNSRP
ALTTLCNVNSSSNIASSNGQTHGYSPITAKGHKDSVYALAMNDTGNLLVSGGTEKVVRVW
DPRTGSKKMKLRGHTDNIRTLLLDSTGRYCLSGSSDSMIRLWDLGQQRCVHSYAVHTDSV
WALATTPSFGHVYSGGRDQSVYLTDLSTRESVLLCTNEYPILQLSLQDDTIWVATTDSSV
YGWPAEGRTPQKVFEKGGSFLAGNLSFSRARASLEGSAPVPVYKEPSIVIPGVPAIIQHE
IMNNRRHVLTKDTAGSVKLWEITRGAVVEDFGKVSFEDKKKELFEMVSIPAWFTMDARLG
CLSVHLDTPQCFSSEIYAVDLNVSGAQEDLKINLAQETLRGLLVHWSKRKQKSSSHSLSN
GDSSSGKDVLSKDTPRSRSEVDDGTENHATHVLPSFEFSTVSPPSIITEGSSGGPWRKRI
TDLDGTEGDLPWWCVDCVTHNRYPKENTKCGFYLHPAEGSPAPNITQGKLSAPRILRIHK
VANYVVEKLVLDKPLDGGSDSTFAMGLSSGQSQLSALDSSSRIGLKPWQKLKPCVEILCN
NQVLSQEMSLATVRTYIWKKPEDLILHYRVVQSR
NT seq 2265 nt   +upstreamnt  +downstreamnt
atgcatcgtgttgggagtgctggtaacacggccggctcgactcgaccgagaaaggagaag
cgcttcacatatgtgcttaatgatgctgattctaaaaagcattgtgcagggatcaactgc
ttggcttatctaaatggttctgcatttagtagaagtgattatctttttagcgggagtcgt
gatggtaccttgaaaagatgggaattaaataatggggatgcaagcttctcagcaactttt
gagtcacatgtcgattgggttaatgatgctattatagttggtgaaaagcttgtttcctgt
tcctcagacacgaccctaaaggtgtggaattgcttctccgagggtgcctgtactaggact
ctccgccagcattctgattatgtgatttgtcttgctgctgccgagaagaatagcaacatt
gttgcctctggtggtcttggtggtgaggtcttcatttgggacatcgatgctgctcttgct
cctgtagccaaatctgttgatgcaaaagaggatgaggttcctaatggaaactccagacct
gctttgacaactttgtgcaatgtaaattctagtagcaacatcgcttcctctaatggacaa
actcatgggtacagtccaattactgccaaaggacacaaagattcagtttatgcactggct
atgaacgatacaggaaaccttcttgtatctggtggcactgaaaaggttgttcgagtatgg
gatcccaggacaggttcaaaaaagatgaaattgagggggcacacagacaatatcaggacc
ttacttcttgattccacaggaaggtattgtctatcaggatcatccgattcgatgataaga
ctatgggatctaggacagcaacgttgtgttcattcttatgctgtgcatactgattcagtt
tgggcgcttgcaaccactccttcatttgggcatgtctacagtggtggaagagaccagtct
gtatacctgactgatttgtccacaagagagagtgtcttactctgcacaaatgaataccct
attctacagttgtctctgcaagatgacacaatatgggttgcaacaacggattcttctgtt
tatggatggccagctgaagggcgcacaccccaaaaggtcttcgaaaagggtggctcattc
ttagctgggaatttgtcattctcaagggcacgagcttctttagagggatcagcacctgta
cctgtgtacaaagaaccatctattgttatcccaggagttccagcaataatccagcatgag
ataatgaataataggaggcatgtactgacaaaggacactgctggttctgtcaagctgtgg
gagattacccggggagctgttgttgaagactttggcaaggtttcttttgaagataagaaa
aaagagctgtttgagatggtaagcatacctgcctggttcaccatggatgctcgattggga
tgcttgtctgtccacctggatactccacaatgcttctcttctgaaatatatgcagttgac
ttaaatgtttctggagcacaagaagaccttaagattaatttggctcaggagacacttcgt
ggtttgctagttcattggagtaaaaggaaacagaagtctagttcacatagtttgtcaaat
ggggatagttcatcagggaaagatgttctgtcaaaagacacacctcgttcgagatccgag
gtggacgatggaactgaaaaccatgcaactcatgtgcttccatcatttgagttttctaca
gtttcgcctccgtcaattatcacggaaggttctagtggaggaccttggagaaagagaatt
actgatttggatggaactgagggtgatctcccatggtggtgtgtggactgtgtcacccac
aatcgatatccaaaggagaatacaaaatgtggcttttatttgcatcctgctgaaggatcg
cctgcgccaaacataactcaagggaagctgagtgctccacggatattgagaattcacaaa
gtcgctaattatgtggttgagaaactcgttcttgataaaccgttggatggaggctctgac
agcacatttgctatgggattgagttctggtcaatcacaactctcagcgctagatagttct
tcacggattggactaaagccatggcaaaaactaaagccatgtgtagagatattgtgcaat
aaccaggttctatcgcaagagatgagtttggctacagtgagaacatatatttggaagaag
ccggaagacttgattcttcattatagagtggtccaatcgagatga

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