Panicum virgatum (switchgrass): 120663678
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Entry
120663678 CDS
T07260
Name
(RefSeq) nucleolar protein 6-like
KO
K14544
U3 small nucleolar RNA-associated protein 22
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120663678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120663678
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120663678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nrap_D5
Nrap_D4
Nrap_D3
Nrap
Nrap_D2
Nrap_D6
Motif
Other DBs
NCBI-GeneID:
120663678
NCBI-ProteinID:
XP_039798506
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All DBs
Position
3N:2594067..2608279
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AA seq
1050 aa
AA seq
DB search
MAAAAEYSIDHKLSKLVEEARPSAAALRAAAQAADAVAELIKRVPQQQAPPEAARGFVRD
LGLEEEKLAFTFRPPEVVRLAGSHAVGAVTRPDVAADLLVRLPKECFHEKDFLNHRYHAK
RCLYLCVIEKNLRSSRLIRKVSWSTFQDEARKPVLDVYPATEIADLPGFYVRIIPTGNSL
FNVSKLNVSTRNNVRAHTKDGINLPTPKYNCSILEDMFLEENAEFMSSTFADWKALQEAL
VLVKVWARQRTSIYTHDCLNGYLISAILVFLTVDCGGSIITKSMTTRQIFRVVMNFLATS
KVWAKGLVIQSMKKRTITKEDLANCLKTFDVAIWDISGHVNLAFRMTKSAFVELQDEAAC
ALSCLDKCRDGGLEELFMTKVDFGAKFDSCLRINLKENSKFTSLSYCVDDESWRILENDV
QSLLQQGLTDRTKMIRVLRRSTPSKWKIMDGFSEFRNSPLLVGIMLSSLEKSFRLVDIGP
NPENRNEAIEFRRFWGEKAELRRFKDGNIAESTVWECESWERHTIIKRIADYVLMKHLSL
QKDDLIHVVDQLDFCLLVDGQDPVSSSGALLEAFDTLSKQLRLLDDVPLKISTVQPLDPA
FRHTSVFPPEPHPLAYGKSSQRLPNFTTTCIRSMEVMIQLEGSGNWPLDTVAMEKTKTAF
LLKIGESLEDRGMFVSASEDEVNVLTSGYSFLLKIFHERGLVLQNQAGDDNIQTALSQDK
MLFQRSQHSSMINGLHGRYQMYGPVVRLAKRWISAHLFSSFISEEAVELVVAYLFLKPFP
FHAPSSRVAGFLRFLRLLSSFDWTFSPMVVDINNDFNLKDEKEINENFMMSRKSYEQNPH
DIEPAMFLATSYDKASEAWTKQSPSKSVLKRMAAYAKSSAELLTNLILNGQSGQYTWECL
FRTPMSNYDAVILLHHEKLCCPSHVLFPAETPNGKLVIWGKPSKDFHPYMPLNKGAVKSL
HDARDKLLVNFDPITYFLRDLKGALPKAFKLWYGSIGGDAVGLTWDKPKKRGREEADETM
PEPTSILKEAGDVGKGLVRSVYLLKASKLQ
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccgccgaatactccatcgatcacaagctctccaagctcgtggaggaagct
cggccgagcgctgcggccctccgcgccgccgcccaggctgctgacgccgtcgcggagctc
atcaagagggtgccgcagcagcaggcgccgccggaggccgctcgaggtttcgttagggac
ctggggctggaagaagagaagctcgcgttcaccttccggccgccggaggtggtgcggctc
gctgggagccacgcggtcggcgccgtcacgaggcccgacgtcgctgccgaccttctcgta
cgcttacccaaggaatgcttccacgagaaggatttcctaaatcaccggtaccatgcaaag
aggtgcctttacctctgtgtcatcgagaagaacttgaggtcctctcggttaatccgcaaa
gtttcatggtctacctttcaggatgaggctcgaaagcctgtgcttgatgtatatccagca
acagaaattgcggaccttcctgggttctatgtgagaataatcccaaccgggaattctttg
ttcaatgtttcaaagttgaatgtatcaaccagaaacaatgtccgtgcacataccaaagat
ggcataaacctacccacaccaaagtacaattgtagcatattggaggacatgtttttggag
gaaaatgcagagtttatgagcagcacctttgctgactggaaagctttgcaagaggccttg
gtgttagtgaaagtttgggcacgtcaaagaacttcaatctacacacatgattgcctcaat
ggatacttaatatctgccatccttgtgtttcttactgtggattgtggaggaagcataatt
actaaatcaatgaccacaagacaaattttccgtgtcgtaatgaattttttggcaacttcc
aaggtgtgggcaaagggtttggtgattcaatcaatgaagaagcgtacaatcaccaaagag
gaccttgccaattgcctgaaaacatttgatgttgccatatgggatatatctggccatgta
aatctggcatttcggatgacaaagtctgcttttgtagagcttcaagatgaggcagcttgc
gcacttagttgccttgataaatgcagagatggtggacttgaagagctttttatgaccaaa
gttgattttggtgctaagtttgactcatgcttgaggataaacttgaaagagaactctaaa
tttacttcattaagctattgtgtggatgatgaatcttggagaatccttgaaaacgatgtt
cagtctttgctgcaacaaggacttacagatagaacaaagatgatccgagtcctgaggaga
agcacaccttctaaatggaaaataatggatggtttctcagaatttaggaacagtccactg
cttgttggcataatgcttagctcattggaaaagagttttcgtcttgttgatattggccca
aaccctgagaaccgcaatgaggctattgaatttaggagattttggggagagaaagctgaa
cttaggagattcaaggatggaaatattgctgaaagcacagtgtgggaatgtgaatcttgg
gagaggcacacaattatcaaaaggatagctgattatgtgcttatgaaacatttgtcgctg
cagaaggatgatttgattcatgttgttgatcagctggacttttgcctcttagttgatggc
caagatccggtctcatcttctggagctttgcttgaagcttttgatactttatctaagcag
ttacgtctgttggatgatgtcccgcttaaaatatctactgtgcaacccctagacccagct
tttaggcacacttctgtgtttcctcctgaacctcatccgctggcatatggaaagagttct
cagaggctgccaaatttcacaacaacttgcattagatctatggaagttatgattcagcta
gagggatctggtaactggccgttggatactgtggccatggagaagacaaagactgcgttt
cttttgaaaattggtgaaagcttggaggatcgaggaatgtttgtttccgccagtgaagat
gaggtgaatgtccttacatctggatattcattcttactcaaaatatttcatgaaagaggc
ttagtattgcaaaaccaagctggagatgataacattcaaactgctctatcacaagataag
atgctttttcaacggagccaacactcgagtatgatcaatgggctgcatggccgttaccag
atgtatggaccagtagtcaggctagcaaaaagatggatatctgcacacctattttcttca
tttatctcagaggaggcagttgaattggtggttgcttatctatttttgaagccattccca
ttccatgccccttcttctcgggttgctgggtttctcaggtttttgcggttgttatccagt
tttgactggaccttttcacccatggttgttgacataaataatgacttcaatctcaaggat
gagaaggagatcaatgaaaactttatgatgagcagaaaatcttatgagcaaaatcctcat
gatatagagcctgcaatgtttctcgctacgtcatatgataaagcatctgaagcatggaca
aaacagtcgccaagcaagtcggttctcaaacgaatggctgcttatgctaaaagcagcgca
gaacttttaacaaatcttatactaaatggtcaatcagggcaatatacgtgggagtgcctg
ttccgaacacctatgagcaattatgatgctgttattctcctccatcacgagaagctttgc
tgtccaagtcatgtacttttccctgccgagactcctaatggtaagttggtgatctggggc
aaacccagtaaagatttccacccatatatgccactcaataaaggggctgtgaaaagtttg
catgatgcaagagataaacttttggtaaacttcgacccaattacatacttcctgcgagac
ttaaagggcgcattacccaaggccttcaaactgtggtatggttcaataggaggagacgct
gttggtcttacatgggataagccgaagaagcgtggcagagaggaggctgatgaaaccatg
ccagagccaacatctatccttaaggaggctggggacgttggcaaaggtttggtgaggagt
gtatatctcctgaaagcatcaaagcttcagtaa
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