Panicum virgatum (switchgrass): 120663729
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Entry
120663729 CDS
T07260
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120663729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120663729
03036 Chromosome and associated proteins [BR:
pvir03036
]
120663729
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120663729
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120663729
PBAF complex
120663729
GBAF(ncBAF) complex
120663729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
FYVE
DUF4428
Motif
Other DBs
NCBI-GeneID:
120663729
NCBI-ProteinID:
XP_039798559
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All DBs
Position
3N:2998152..3004201
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AA seq
782 aa
AA seq
DB search
MPRKASSTSDARAKWRKRKRAAASPSPSKQQADHSDDSDSAAAANGDEDAPRGASANGGG
GTLAAGGGGGGDDDPVLDLRGAEVLSSPAEPISSFPVAVRRSVGRPHPSVLAIVDAERAA
AGADGAPAAPASVPVLENISHGQLQVISAMLPDHPSLSHDPDKPSTYVCTPPPLMEGCGV
HKQFYGRLHIVPRHSDWFMPTTVHRLERQVVPQYFSGKSQGQIPEKYMMLRNKVIAKYLE
RPGKRLVFAECQGLVTSTPELYDLSRIVRFLESWGIINYLATGSVHRGLRMAASLIKEET
TGELQLVSAPMKSIDGLVLFDRPKCSIRADDIASVVSTSSASVVANGDIDSANLDEKIWE
RLSETFCSFCSQTLPSLHYESQKEADIALCSDCFHSARFVTGHSSLDFQRVDGMKDRSDT
DGDRWTDQETLLLLEGIEKFNDNWNHIAGHVGTKSKAQCIHHFIRLPVEDGLLENIEVPE
ASLPSRIQSNGFLHSDSNGSTSGCLHQSSQSGNQIPFINSANPVMSLVAFLASEVGPRVA
AACASAALSVLTRDDSRMCSEGINAVGHSARQNYGPSSSISPETVKHAAICGFSAAATKS
KLFADQEEREIQRLAATIINHQLKRLELKLKQFAEVETMLLKESERIELMRQQLAAQHVR
ILSTRLPSTGGTLPGGGSTMSSNPMNQATSIRPQMMQVSMPQSSMPSMYANNMQGHPQMA
ALLQQRQQMLLFGPRLPLSAIHPGTPSSSSPSMMFNPGMPNSAAPNHHSLLGPPSGNNSN
VG
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcaaggcctcctccacctcagatgcgcgggccaagtggcggaagcggaagcgc
gccgccgccagcccttccccgtccaagcagcaggccgaccactccgacgattctgactcc
gccgcggcggcgaacggcgacgaggacgcgccccgcggcgcctctgccaacgggggcggc
ggaaccctagctgccggcggcggcggcggcggcgatgacgaccccgtgctcgacctccgc
ggggcggaggtgctttcatctcccgccgagccgatctcctccttccccgtggccgtccgc
cgctccgtcggccggcctcacccctcggtgcttgctatcgtcgacgcggagcgcgcggcg
gccggtgccgacggtgctccggccgccccagcctcggtacccgttctcgagaacatttcg
cacggtcagctccaggtgatctcggcgatgctgcccgaccacccgtccctgtcacacgac
cctgacaagccgtccacgtatgtctgcaccccgcctccactcatggagggatgtggagtg
cacaagcagttctacggcagacttcacatcgtgcccaggcactcagattggttcatgcca
acaacggtgcacagattggagaggcaggttgtgccgcagtacttctctggaaaatcccag
gggcaaataccagagaagtacatgatgttgaggaataaggtgattgcaaagtatttggag
cgtcctgggaaaagactcgtgtttgcagagtgccaggggcttgtcacaagcacacctgaa
ttgtatgacctgagtaggatagttaggttcctggaatcttgggggatcattaattacctt
gcaacggggtctgtgcaccgtggcctcaggatggcagcatcactaatcaaggaggagaca
acaggggagctgcaactggtatctgcaccgatgaaatcgattgatggtttggttttgttt
gatcggccaaaatgcagtatccgggcagatgatatagcttctgtggtgtcaacttcatct
gcttcagtggtggcaaatggtgatattgattctgcgaatttggacgagaagatctgggag
cgcttatcagagactttttgtagtttctgctcacaaactttgcccagtttacactacgag
tcacaaaaggaggcagacattgctctttgttcagattgcttccacagtgcaagatttgtt
actgggcattcaagcttagattttcagagagtggatgggatgaaggatcgatcagacact
gatggggacagatggactgatcaggaaactttactgttgttggagggcattgagaagttc
aatgataactggaaccatattgcagggcatgtcggaacaaagtcaaaagcacaatgtatt
caccattttattcgtctcccagtggaagatggtttgttggagaacattgaagtgccagaa
gcatccctaccatccagaattcaaagcaatgggtttttgcattcagattccaatggcagt
acttcaggttgtttacatcaaagtagccaatctggaaaccagattccattcattaattct
gctaatccggtcatgtcactggttgcgtttttggcctctgaagtaggaccaagggttgca
gcagcctgtgcaagtgcagcattatcagttttgacaagagatgattccaggatgtgttca
gaaggcatcaatgccgtgggtcattctgctcgtcaaaattatggaccctcgtcgtccatc
tctcctgaaactgtcaaacatgctgccatttgtggcttttcagctgctgcaacaaagtcc
aaactttttgcagatcaggaagagcgcgaaattcagagattagctgcaaccatcataaat
catcagctaaagagactggagttgaagttgaagcagtttgcggaggttgagaccatgctc
ttgaaggaaagcgaacggattgagctgatgaggcagcagctggcagctcagcatgtccga
atattatcaacccggttaccttcgacgggtggcactctaccaggaggtggcagtaccatg
tcttcaaatccaatgaatcaggccaccagcattagaccgcagatgatgcaggtctcgatg
ccgcagtccagcatgccgtccatgtatgccaacaacatgcaggggcatccccagatggct
gctctgctgcagcagcgtcaacagatgctcttgtttgggcctcgcctgccgctctcagca
atccaccctggcacaccatcctcgtcttcgcccagtatgatgttcaaccctggtatgccc
aactcggctgctccaaatcaccactcgctgttgggaccaccctcagggaacaattcaaat
gtaggttaa
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