Panicum virgatum (switchgrass): 120663740
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Entry
120663740 CDS
T07260
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00040
Pentose and glucuronate interconversions
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120663740
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
120663740
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
120663740
NCBI-ProteinID:
XP_039798574
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Position
3N:complement(3110522..3112165)
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AA seq
358 aa
AA seq
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MDPPPPPLQPPPPHPRNRHGEGHGGGEMPYQDADHRLRALAGRAEGFGRHAIGGLHGAVY
HVTSLQDDGRGSLREACRAAEPLWIVFEVSGTIHLQSYLRVSSHKTIDGRGQRVVLTGKG
LQLKSCHHVIVCNLVFEGGRGHDVDGIQIKPGSTNIWIDRCTLADYDDGLIDITRQSTDI
TVSRCHFARHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTR
SWGIYAVCASVEAQVVSQCNIYEAGGGPPKKTTVFKYMPEKAADREDTVAGLIRSEGDAF
LNGALPCLVDGPGAAHEAVFRPEDYYQHWTMEPASPALKDIIQLCAGWQPVPRPPDDC
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atggatccccctcctcctcccctgcagccgccgccgccgcatcctcgcaatcgtcacggt
gagggtcacggcggcggggagatgccgtaccaggacgcggaccaccggctccgcgcgctc
gccggccgcgccgagggattcggccgccacgccatcggcggcctccacggggccgtctac
cacgtcacgtccctccaagacgacggccgcgggagcctgagggaggcgtgccgcgcggcg
gagcccctgtggatcgtcttcgaggtgtccggcaccatccacctccagtcctacctccgc
gtctcctcccacaagaccatcgacggccgcggccagcgcgtggtgctcaccggcaagggg
ctccagctcaagagctgccaccacgtcatcgtctgcaacctggtgttcgagggaggccgg
gggcacgacgtcgacggcatccagatcaagccgggatcaaccaacatctggatcgaccga
tgcaccctcgccgactacgacgacgggctcatcgacatcacgcggcagagcacagacatc
acggtctcaaggtgccactttgcccggcacgacaagacgatgctcatcggcgccgacccc
acgcacgtcggcgaccgctgcatcagggtcaccatccaccactgcttcttcgacggcacg
cggcagaggcacccacgcctccgcttcggcaaggtccacctctacaacaactacacacgc
agctggggcatctacgccgtctgcgccagcgtggaggctcaggtggtgtcccagtgcaac
atctacgaggcaggcggagggcccccgaagaagaccacggtgttcaagtacatgccggag
aaggccgccgaccgagaggatacggtggccgggttgatcaggtcggaaggggacgctttc
ctcaatggggcgctgccctgcctggtcgatggccctggagctgcacacgaagctgtcttc
agaccagaggattactaccagcattggaccatggagccagcgtcgccggcgctcaaggac
atcatacaactctgtgccggatggcagccggtgccaaggcctcctgacgattgctag
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