Panicum virgatum (switchgrass): 120663889
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Entry
120663889 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120663889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120663889
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120663889
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120663889
BRITE hierarchy
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GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
FAIM1
DUF7567
Motif
Other DBs
NCBI-GeneID:
120663889
NCBI-ProteinID:
XP_039798764
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Position
3N:5483994..5488538
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AA seq
348 aa
AA seq
DB search
MDMDSVECLSLPDASMDVDDVDTHPHHGHHAHLGLPLHPAHLPSAGAGRAYPKVNAGAGA
AAAAGAAAAAGAGGGPPATSVHELLECPVCTNSMFPPIHQCQNGHTLCSTCKARVHNRCP
TCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYSKIKHEAQCSFRPYNCPYAGS
ECAVSGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCL
HFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSIRDSHRKVRD
SHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQTNPDGACIPNLCS
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggacatggacagcgtggagtgcctctccctcccggacgcctccatggacgtggacgac
gtcgacacccacccgcaccacggccaccacgcccacctcggcctcccgctccaccccgcc
cacctgccctccgccggggccggccgcgcgtaccccaaggtgaatgccggagccggggcg
gcggctgcggcgggggcggcggccgcggcaggagcgggcgggggcccgccggcgaccagc
gtgcacgagctgctggagtgccctgtctgcaccaactccatgttcccgcccatccatcag
tgtcaaaatggacatactttgtgttcgacgtgcaaggccagggtgcataaccggtgccct
acatgcagacaagagcttggtgatatcagatgcttggcactggaaaaagtagcagagtca
ctagagcttccctgtaagtactgctctttaggttgccccgagatcttcccatactacagc
aagataaagcatgaagcgcagtgcagcttcaggccgtataattgcccttatgctggctct
gaatgtgctgtatctggtgatattccattccttgttgcacatttgagggatgatcacaaa
gttgacatgcacagtggctgcacattcaaccatagatacgtcaaatccaacccacgagag
gttgaaaatgccacatggatgctaacagtattccattgttttgggcagtacttctgcctg
cactttgaagccttccagctcggaatggctccagtttatatggctttcctccgatttatg
ggggatgagaatgaagcaaggaactatacatacagcctagaggtcggtggtaacggtagg
aaaatggtatgggaaggcactccaaggagtatccgagacagccatcgcaaggttcgggac
agccatgacggcctcatcatccaaaggaacatggcgctgttcttctcgggcggtgatagg
aaggagctgaagctgagggtgactggccggatctggaaagagcagaccaacccggacgga
gcctgcattccgaacctttgcagctga
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