Panicum virgatum (switchgrass): 120663978
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Entry
120663978 CDS
T07260
Name
(RefSeq) probable C-terminal domain small phosphatase
KO
K15731
carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:
3.1.3.16
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120663978
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120663978
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120663978
Protein phosphatases and associated proteins [BR:
pvir01009
]
HAD phosphatases
Fcp/Scp phosphatases
120663978
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120663978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NIF
HAD
Motif
Other DBs
NCBI-GeneID:
120663978
NCBI-ProteinID:
XP_039798868
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All DBs
Position
3N:6320022..6321558
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AA seq
318 aa
AA seq
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MVSRTPTKPPPSPRLGAGAANVTPPKPSPSPVARRRHSLRRRLPYATTKRRGSPLKSLAS
APAAVAATFDRSLRSCRRRLLKLFARLAVLGSPRKRRAAAAGFQRLRSASPPATPPPPPS
QNPAAARAQPAALPPPPSPGRRTLFLDLDETLIHSQTDPPPARFDFTVRPVIGGRAVTFY
VAKRPGVEAFLRAAAESFEVVVFTAGLQEYASLVLDRLDPDGEVFAHRLYRGACRDAGDG
RFVKDLAATGRALDRAVIVDDNPNAYALQPENAIPVAPFVDDDNDQELKRVVAFLDVAAA
YEDTREAIRYYQDLVTPS
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcgaggacgcccacgaagccgccgccgtcgcccaggctcggcgccggggcggcc
aatgtcacaccgccgaagccgtcgccgtcacccgtggcgcggcgccgccactcgctccgc
cgccgcctgccctacgccaccaccaagcgccgcgggagcccgctcaagtccctcgcgtcc
gcgcccgccgccgtcgccgcgaccttcgaccgctccctccgctcctgccgccgtcgcctc
ctcaagctcttcgcccgcctcgccgtcctcggctccccgcgcaagcgccgcgccgccgcc
gcggggttccagcgcctccgctccgcctcgcctcccgccacaccccctcccccgccctcg
cagaaccccgccgcggcccgcgcgcagcccgcagcgctcccgccgccgccgtcgccgggg
aggcggacgctgttcctcgacctcgacgagacgctcatccactcccagaccgacccgccg
cccgcgcggttcgacttcaccgtgcgccccgtcatcggcggccgggccgtcaccttctac
gtcgccaagcgcccgggcgtcgaggccttcctccgcgcggcggcggagagcttcgaggtc
gtcgtcttcaccgcggggctccaggagtacgcctccctcgtgctcgaccgcctcgacccc
gacggcgaggtgttcgcgcaccgcctctaccgcggcgcgtgccgcgacgccggggacggg
aggttcgtcaaggatctcgccgccacaggccgggcgctggaccgcgcggtcatcgtcgat
gataaccccaatgcctacgccctgcagccggagaacgccattcctgtggcgccgtttgtg
gacgatgacaacgaccaggagctcaagagggtggtggcgttcttggacgtcgctgcggcg
tacgaagacacaagggaggccatcagatattaccaggatctcgtcacgccaagctga
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