Panicum virgatum (switchgrass): 120664011
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Entry
120664011 CDS
T07260
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
pvir03420
Nucleotide excision repair
pvir03430
Mismatch repair
pvir03440
Homologous recombination
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120664011
03420 Nucleotide excision repair
120664011
03430 Mismatch repair
120664011
03440 Homologous recombination
120664011
03460 Fanconi anemia pathway
120664011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120664011
03032 DNA replication proteins [BR:
pvir03032
]
120664011
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120664011
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120664011
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120664011
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120664011
MMR (mismatch excision repair)
120664011
DSBR (double strand breaks repair)
HR (homologous recombination)
120664011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
DUF223
BRCA-2_OB1
CDC24_OB3
zf-CCHC_2
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
120664011
NCBI-ProteinID:
XP_039798902
LinkDB
All DBs
Position
3N:7110332..7114579
Genome browser
AA seq
927 aa
AA seq
DB search
MAAPVQLTPGGVPLVSNHVAGAETVQAVLQVLDVRAVVHKSNDNPGGSNRYRMLLSDGVY
SLQSMLATAENHHIRDGYIQKGSIIHLQEYTCSTIKTRRITIVLKLDVLQTECEIIGSPK
PYELVNPPTEQAPNLPANAAQVNSGAYSSGPGMLGSSVAPRVAQVANNVSQGGSYGGHPG
MVNPPIGRAVDHVPNVSSGGSYGSYGTASAHNTMNADMVQSNLQQPSLNSHQNQRFAVPA
MAGGSSAPVNTMNADMVQSNLQQPSLNSHQNQRFAVPAMAGGSSAPVNTYGLPAQPFYQQ
PPPGHMNRGPVTKNEATRAIPVAQLNPYQERWTIKARVTSKTDLKHFKNDKGPGKVFSFH
LLDAQGGEIRATCFNVQADQFFDLIEVDKVYLISRGSLKPAQKKFNPLNHEYEITLDFKT
SIEVCPNDDSSIPRQQYNFHQISEIENIEVNSIVDLVGIVTSVCPSATLTRKDGSETQKR
TLQLKDMSGRSVEVTLWGKFCDAEGQKLQSLCDSGLNPVLALKSVRVTEFNGRSVSTISS
TQLKIDPDFPEADKLQHWYATEGKTAACVSLSAASSMGKTDIRKTVVQIKDENLGRSEKP
DWITVKGAISHVNTDSFCYPACTWELNGRQCNKKVINNGDGTWLCEKCDQRLEKCEYRYL
LQCQIQDHTGLTYANAFHEPGLEILGYSAEELYNIKEEDAERFAEIIQGVRWQQFLFKLK
VYEETFNDEQRIKCQITKAEKLDLSRECSYLLKAIGALLQDDTGSPSEVQGASMAYNAGL
NNSSTRQSVPASNIPHATSMPTPKYGESANQFGQQANPYGGMSAPFSATRNVQTCMSCGS
SGHNAQNCPSGIYRQQQQQPAANTAISYGSSPGDVGSGLCYKCNQPGHFARNCPGVGAAP
QQQPYGSGVASGAYGRPPNVRVRATNY
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccggtgcagctgacccccggcggggtgccgctggtctccaatcacgtcgcc
ggcgccgagacggtgcaggcggtgctgcaggtgcttgacgtgcgggctgtcgtccacaag
agcaacgacaaccccggcggctccaaccgctaccggatgctgctctccgacggcgtctac
tcgctgcagtccatgctcgccaccgccgagaaccatcacatccgggacggctacatccag
aaggggtccatcatccacctccaggagtacacctgcagcaccatcaagacacgcaggatc
actattgttctcaaacttgatgttctgcaaactgagtgcgagataatcggaagccccaaa
ccctatgagttggtaaacccacctacggagcaggcccccaacttaccggccaatgctgct
caagttaatagtggagcatattccagtggcccaggcatgctgggatcttctgttgctcca
agggtagcacaggttgctaataatgtatcacagggtggatcctacggtggtcatccgggt
atggtgaaccctccaattggtcgagcagtagatcatgttcctaatgtgtcatctgggggc
tcttacggttcttatggtacagcttcagcacataatacaatgaatgctgacatggtgcag
tcaaacttgcagcagccttcactgaactctcaccagaaccaaaggtttgcagttcctgcc
atggctggtggcagtagtgctcctgtcaatacaatgaatgctgacatggtgcagtcaaat
ttgcagcagccttcactgaactctcaccagaaccaaaggtttgcagttcctgccatggct
ggtggcagtagtgctcctgtcaatacttacggcctccctgcacagccgttttatcagcaa
ccacctccagggcatatgaatagaggtcctgttactaagaatgaagctacccgtgctatt
ccagtggctcaattgaacccctaccaagaaagatggacaatcaaggctagggtgacttca
aagactgatcttaagcacttcaaaaatgacaaaggtcctggaaaagtcttctcctttcat
ctccttgatgcacagggtggagaaatccgtgcaacatgcttcaatgtgcaggctgatcag
ttttttgacctaattgaggttgataaggtgtacttgatatctagagggtcgctgaaacct
gcacagaagaagtttaaccctttgaatcatgagtatgaaataactctggatttcaaaact
tctattgaagtttgccctaatgatgatagcagcatccctaggcagcaatacaatttccat
cagataagcgaaattgagaacattgaggttaattctattgtggacttggttgggattgtt
acatcagtttgcccttctgccacactaacacggaaggatggttcggaaacccagaaaaga
actcttcaactgaaagacatgtctggtcgaagtgtggaagtaaccttatgggggaaattc
tgtgatgctgaaggccagaagctgcagtctctgtgtgattctggtttgaatcctgtacta
gctttgaaaagtgtccgtgttactgaattcaatggtagatctgtgagcaccatcagctca
acccagttaaaaatagacccagactttcctgaggctgataagttgcaacactggtatgca
actgaagggaagactgctgcttgtgtttctttgtcagctgcaagtagtatgggcaagact
gatatccggaaaacagttgtgcagatcaaggatgaaaatctggggcgatcagagaagccg
gactggatcactgttaaaggtgcaatttcgcatgtaaacactgatagtttttgttaccct
gcatgtacatgggagctgaatggtaggcagtgcaacaaaaaggtgataaataatggtgat
gggacatggctttgtgagaaatgcgaccagagattagaaaagtgtgaatataggtacttg
ctgcagtgccagatccaggatcacactgggctcacctatgctaatgcattccatgagcct
ggtttggagatacttggctacagcgctgaagagctttataacataaaagaagaagatgca
gaacgatttgcagagatcatacagggggttcgctggcagcagtttctattcaagctgaaa
gtctatgaggagacctttaacgatgagcagcgaatcaagtgccaaattacaaaagcagag
aagctggatttatcgagagaatgctcttaccttctgaaggcgattggtgccctattgcag
gatgatacaggctcaccatctgaggttcaaggcgccagcatggcctataatgctggtctc
aataactccagcactcgacaaagcgtgccagcctccaacatcccccatgccacgagtatg
cccaccccaaagtatggtgagtctgcgaaccagtttgggcagcaagctaacccatatggc
gggatgtccgctccattttcagcgacacggaatgtgcagacctgcatgtcttgtgggtca
agtgggcacaatgcccagaactgcccttctggcatatataggcagcagcagcagcagcct
gctgcgaacacagctatctcctacggctcttcacctggtgatgttggctctggtctgtgt
tacaaatgcaatcagcctgggcactttgccagaaattgccctggtgtgggtgctgcaccc
cagcagcagccgtatgggagcggcgttgcatcgggagcatatggtaggccgcccaacgtt
agggttagggctacgaattactga
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