Panicum virgatum (switchgrass): 120664012
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Entry
120664012 CDS
T07260
Name
(RefSeq) small nuclear ribonucleoprotein Sm D2-like isoform X1
KO
K11096
small nuclear ribonucleoprotein D2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120664012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120664012
03032 DNA replication proteins [BR:
pvir03032
]
120664012
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
Sm proteins
120664012
U2 snRNP components
120664012
Complex B
U1 snRNP components
120664012
U4/U6.U5 tri-snRNP components
120664012
Complex C
U2 snRNP components
120664012
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
120664012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
IRF-2BP1_2_M
Motif
Other DBs
NCBI-GeneID:
120664012
NCBI-ProteinID:
XP_039798903
LinkDB
All DBs
Position
3N:7119834..7125883
Genome browser
AA seq
169 aa
AA seq
DB search
MLWRIQISSGALCKIVARSSSPSRKRKNPLVPPATQPRVLPSRRRLAAPDSPPRHPDCQF
YFKAMAEETNGKKEEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM
VLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgctatggcgaatccagataagttcgggggctttgtgtaaaatcgtagcccgttcgtct
tcgccttccagaaaaaggaaaaaccctctcgtcccgccggccacccagcctagggttctt
ccttcccgccgccgcctcgctgctccagactcgcctccacgccacccagactgccagttc
tacttcaaagccatggcggaggaaaccaatggaaagaaggaggaggaggaggagttcagc
acaggtcctctgtcagtgctcatgatgagcgtcaagaacaatacccaggttcttatcaac
tgccggaacaacaagaagttacttggtcgtgtgagggcatttgataggcactgcaacatg
gttcttgagaatgttagggagatgtggactgaggtaccaaaaaccggtaaaggcaagaag
aaggctcttccagtgaacaaagacaggttcataagcaagatgttcctccgtggtgattca
gttatcattgttctcaggaacccaaaatga
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