Panicum virgatum (switchgrass): 120664039
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Entry
120664039 CDS
T07260
Name
(RefSeq) protein gar2-like
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120664039
03036 Chromosome and associated proteins [BR:
pvir03036
]
120664039
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120664039
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
120664039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
zf-CCHC
zf-CCHC_6
RRM_7
zf-CCHC_4
Nup35_RRM_2
RBD_DEAH11
Motif
Other DBs
NCBI-GeneID:
120664039
NCBI-ProteinID:
XP_039798935
LinkDB
All DBs
Position
3N:complement(7362763..7366753)
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AA seq
586 aa
AA seq
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MVLARKKLKQKLHTLLPAGEAELEEAHGEEVQAVKERLASSKRPRPKRPPRKKSLPEVVL
QTEEERREEVERRREERRKEKKEKRRIRRLMEAETAAATQQVGGEMGPETEGTEGASEED
DPVVESDQPVVAENREQNINKMEVTKPGVGSKSPIVAKNKLQNQKVKLAESGVGSDNPVA
TEHREQSVNKVYVGGIPYYSSEDDIRSFFEGCGSITAIDCMTFPESGKFRGIAILTFKTD
AAAQRALAMDGADMGGLYLKIQPYKHNREKEDFAPKLIEGYNRMYIGNLPWDITEDDLKK
FFSNCKISSIRFGTDKDTGDFKGYAHVDFSDGASVAVALKLDQRVIKGRPVRIRCAVPKK
DNQKISDNGNSDSSKSKIRTCYECGDPGHLSSSCPNKKDSEVRKCYECGTPGHLSSACPN
KKISDEKKANVDSATASSKKRRTCYECGIPGHLSSACPNKRPADSVQSNREPVDDANVEP
PAIVSEEMKVGDESNSVPSKKRRKCYECGISGHLSSACPNKKIAEVVDDELKCDTGSNTI
PSTIVEEEKASDDTKSAPAKKKKRRTCYECGIAGHLSSECPNKAAA
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggtgctcgcgcgcaagaagctgaagcagaagctgcacacgcttctcccggccggtgaa
gccgagttggaggaggctcatggcgaggaggtgcaggctgtgaaggagcggctcgcctcc
tccaagcggccgcgccccaagcggccgcccaggaagaaatcgctccccgaagtggtgttg
cagacggaggaggagcggagggaggaagtggagaggaggagagaggagaggaggaaggag
aagaaggagaaaaggaggatcaggaggttgatggaggccgagaccgcggcggcgacgcag
caggtgggaggggagatggggccggaaacagagggcacggaaggggcttcggaagaagac
gatcctgttgttgagtctgaccagccagtcgtggcagagaatagggagcaaaatataaac
aagatggaggtgaccaaacctggagttgggtccaagagtcctatagttgctaagaacaag
ctgcaaaatcaaaaagtgaaattggctgaatctggtgttgggtccgacaatcctgttgcc
acagagcatagagagcaaagcgtaaataaggtgtatgttggtggcattccgtactattca
tctgaggatgacataagaagtttctttgaaggatgtggcagtatcactgcaatcgactgc
atgacctttcccgagagcgggaaattcaggggtattgcaattctcacatttaagactgat
gctgctgcacagagggcattagctatggatggtgcagatatgggaggattgtatctgaaa
atccagccatacaaacataaccgtgagaaggaagattttgcaccgaagttgatagaggga
tataataggatgtatattgggaatctaccatgggatataacagaagatgatctgaagaag
ttcttttcaaactgcaaaatctcatccatccgatttggaacagacaaggatacaggtgat
ttcaaaggctatgcacacgttgatttttctgatggtgcatccgttgctgttgcactgaag
ctcgaccagagggtgattaagggacggccagtcagaatcagatgcgcagttcccaaaaag
gataatcagaaaatcagtgataatgggaactcagattcttcgaagagtaagattcgtaca
tgctatgaatgtggggatcctgggcacctttcttcttcttgcccaaataagaaggattct
gaagtacggaaatgctatgaatgtggcacccctgggcacctatcttctgcttgcccaaat
aagaagatttctgatgaaaagaaggctaacgttgactcagccacagcatcatcaaagaag
aggcgaacatgttatgaatgtggcatccctggccatctctcatcggcttgcccaaacaaa
aggcctgcagactctgttcagagcaacagggagcctgttgatgatgcaaatgtagaacca
cctgccatcgtatctgaggaaatgaaagtaggtgatgaatcgaattcagtaccttcaaag
aagaggcggaagtgctatgagtgtggaatttctggccatctctcgtcagcttgcccgaac
aaaaagattgctgaggttgttgatgatgaattgaaatgtgatactggctcaaacactata
ccttcaaccattgtcgaggaggagaaggccagcgacgacacaaaatctgcacctgcaaag
aaaaagaagaggcggacatgttatgagtgtggcattgccggacatctctcttcggagtgc
ccaaacaaggcagctgcgtaa
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