Panicum virgatum (switchgrass): 120664087
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Entry
120664087 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120664087
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120664087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120664087
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
120664087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ASXH
Motif
Other DBs
NCBI-GeneID:
120664087
NCBI-ProteinID:
XP_039799022
LinkDB
All DBs
Position
3N:7947647..7953383
Genome browser
AA seq
1322 aa
AA seq
DB search
MAIVRTGAGVRLPRLDGGGEGSPEATEDDEESRATPSQESGADGVSGGEEEEGEGENGGG
GEEPEEAEDELGGEELELEHEEEERDSGMGSDELEVTELGEPGAEMCQVGDQSVAVPLEL
YDLPGLCDVLSLDAWNTLLSEDERLRLAALLPDMDQETFARTLVELLSGQNFHFGSPLAT
LFKQLKGGLCDPRVNLYRRGTRFAERRKHYYWLQSYHNSMVRGLWEIKDCWKGREGYNLD
ERLRILEALKAQKQQRKASASARRAGSETDSESRESGKQVLNQLKLDKIAQKKAGKLVKE
RSKGLLRVNTMKGVDEEYGGGSGRDAAVALSRQDNAYGYDSGTHRGKLHRSTDGLYSEDL
GYERDSSRTQFPRLLLKPVKKELTMSYDGNLYGNKNNYRNNNNASPYYYGRNPGPNQGVT
LAAAYDPPYFDTRRNARYSERDWVKGGKGVQSKALTGDEMHCTAGTHTSEVDDWQKGQLA
GDYRSRKDRAGYGPKVKSYKSIEQQANDARIGSDPRSKISQVKMAGKPSSQFDKIGQKHS
RGNAAYSQSEETESDSSEQFEDSGDVHFLERKPEHHHSGFHRQAHGAKKSKKLSKVVKMN
YPTADADLEPSRSKGFKGNVSEDGYLRDVDVKMTEQISDVMKPPAASGERKRKGMANLET
HVNDNSELHEINENANDSFRLTESERLASKSVQDSNGDFGGIERVSGSTGSKKTKGRVEV
LSLDEQGEHVPSGPKMADNISGLKKKSKKKPESTTDAVTVAEPAADVPEDNVVAVEPEKI
EKPKKKYVPISPTIHTGFSFSVVHLLTAVKKAMVSPVEDTPAAEKQPDRAEGKKWFSNEE
QNKTPQEQSMTEQAQQVLEGADASAAEQNVASNSPALTVQEIVNRIRSNPGDPRILETQE
PLQDLVRGVLKVLSSRTAPLGAKGWKALVAYEKSNKSWFWVGPVPSISSYDDPDEETSAE
AWCIPHKMLVKLVDAFSNWLKSGQETLKQIGSLPPPPPPNPANLDLKERFKELRAQKSLN
TISPSSDEARAYFQREEFLRYSIPDRAFCYTAADGEKSIVAPLRRGGGKPTAKARGHPML
LPDRPPHVTILCLVRDAASRLPARTGTRADVCTLLRDSQYLNHEEANKEAAINQVVSGAL
DRLHYERDPCVLYDNDKKLWTYLHRGREEEDFEDDGTSSTKKWKRPRKDPSDPAEPGAAN
DDFDDDGTGTPLANNAKKQKTDHGDPTVSGEANDEGDNATQNPSCGGQEGDPDLNVPSSK
KYRESVGAVYIDATPDDGVSNSVDAKPGSRADDKPASCQSVPEQNKNSSTLPENTSMDAT
LP
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgtgaggactggcgccggcgtccggctcccgaggcttgacggcggcggggag
ggctcgccggaggccacggaagacgacgaggagtcgcgggccacgccgtcgcaggagtct
ggagccgacggcgtctccggcggcgaggaggaggagggggagggggagaacggcggcgga
ggtgaggaaccagaggaggcggaggatgagttaggcggggaagagttggagctggagcac
gaggaagaggagagggactcggggatgggttccgacgaactggaggtcacggagcttggg
gagcctggcgccgagatgtgccaggtcggggaccagagcgttgccgtgccgctggagctc
tacgacctccccggcctctgtgatgtgctttcgctcgatgcctggaacacactcctcagc
gaggacgagcggctccgtctcgccgccttgctgcccgacatggaccaggagacctttgcc
cgcaccctcgtcgagctcctctcagggcagaacttccactttgggagcccccttgccacc
ctcttcaagcagctcaaaggggggctgtgtgaccccagggtcaacttgtaccgccgtggc
acccgctttgcggagcggcgcaagcattactactggctgcagagctaccacaactcaatg
gtgcgggggctgtgggagatcaaagattgctggaagggccgtgaggggtacaaccttgat
gagaggttgaggatattggaagctttgaaggcacagaagcagcagagaaaagcttcggcc
tcggctcggcgggctgggtcagagactgattcggagagcagggagtctgggaaacaggtc
ttaaatcagctgaagctagataaaattgcacagaagaaggcagggaagttagtgaaggag
aggtctaagggcttgctgcgggtgaatacgatgaaaggagtggatgaagaatatggggga
gggtctggccgtgatgctgcagtggcactttctcgtcaagacaatgcgtatggatatgat
tcaggcacacatagagggaagcttcataggagcacagatggcctttactcggaggaccta
ggatatgaacgggattcgtccagaactcagtttccaaggctgctgctgaagccagtgaag
aaggaattgactatgagctatgatggcaatctgtatggaaacaaaaacaactaccgcaat
aacaataatgcttctccatactactatggcaggaatcccggtcctaatcagggagtcact
ctagcagcagcatatgatcctccatattttgacaccagaaggaatgcaaggtactcggag
agggactgggtaaaaggtggaaaaggtgtgcagagtaaagctctgacaggggatgagatg
cactgtactgctggtacccacactagtgaagtagatgactggcaaaaagggcagttggca
ggtgattacaggagcaggaaagatcgagctggatatggtccgaaggttaagtcctataaa
agcattgagcaacaggctaatgatgctcgcattgggtctgaccctagaagcaagatatca
caggtgaagatggcaggtaaaccaagtagccaatttgataagattggccagaagcactct
aggggcaatgctgcctattctcaaagtgaggagacagaatctgattcatcagaacagttt
gaagatagtggggatgtgcattttctcgaacggaagccagagcatcaccattctggattt
catagacaagcacatggtgccaagaagtcaaaaaagctttctaaagtggtcaaaatgaac
tatcctactgctgatgcagatttagaaccctctcggagcaaaggattcaaaggaaatgtt
tcagaggatggttatttacgtgatgtggatgtgaagatgacggaacagattagtgatgtc
atgaaacctccagcagcaagtggtgaaaggaagcggaaagggatggcaaatttggaaaca
catgttaatgataactccgaactgcatgaaatcaatgaaaacgccaatgattcattcagg
ctaacagagagtgaaaggcttgccagtaaatcggtccaagattctaatggtgattttggt
ggtattgaaagagtaagtggcagtactgggtccaaaaaaacaaaaggaagagttgaagtt
cttagcctggatgagcaaggtgagcatgtgccatctggtccaaaaatggccgacaacatc
agtggcctgaagaagaaaagcaaaaagaagccagagagcaccacagatgcagttactgta
gcagaaccagctgctgatgtgccagaagataatgtagtagcagtagagcctgagaagatt
gagaagcccaagaagaagtatgtaccaatatcaccaactatccataccggcttttcattc
tccgttgtacatcttttaactgctgtaaagaaggctatggtctctcctgttgaggatact
cctgcagcagagaagcaacctgatcgagcggagggcaaaaaatggttcagcaatgaagag
caaaacaaaacgcctcaagaacaaagtatgacagaacaagctcagcaggttcttgagggt
gcagatgccagtgctgcagaacagaatgtagcgagcaattcaccggcacttactgttcaa
gagatcgtcaatcgaattagatcaaatcctggagatcctaggatacttgaaacccaggag
cccctccaggatttagttcgaggagtattgaaggtactgtcatctagaacagctcctcta
ggtgcaaagggctggaaagcactagttgcctatgaaaagtcgaacaaaagttggttttgg
gttggtccagtaccttctatttcatcatacgatgatcctgatgaagaaacttctgcagaa
gcatggtgtataccacacaagatgcttgtgaagttggttgatgcattttctaattggctg
aaaagtggtcaggaaaccctcaagcagataggatcccttccaccacctccaccaccaaat
cctgctaacttggatttgaaggaaagattcaaggagcttagagcccaaaaaagtcttaac
acaataagcccaagctcagatgaagcaagggcatattttcagcgtgaggaatttttgagg
tactccatacccgatagagccttctgctatactgctgctgatggggagaagtctatagtt
gctcccttgagaagaggaggtggaaagcccactgctaaagctaggggtcaccccatgctc
ttacctgatcgcccaccgcatgttactatcctctgtcttgtaagagatgctgcttctcgg
ttgcctgcaagaactggaactagagctgatgtctgcacactactcagagattcacaatac
ctaaaccatgaagaagccaataaagaggctgctattaatcaagttgtcagtggtgctctt
gatcgcttgcactacgaacgtgatccttgcgtactgtatgataatgacaaaaaattgtgg
acctatctacacaggggtagggaggaggaagattttgaggatgatggcacgtcatctacg
aaaaaatggaagagaccgaggaaagatccctctgatccggcagagccaggtgcagcaaac
gatgattttgatgatgacggcactggcacccctttggcgaacaatgcaaaaaagcaaaag
acagaccatggagatcctacagtatcaggagaagctaacgatgagggagataatgcaact
cagaatccatcttgtggtggccaggagggtgatcctgatcttaatgttccatcatcaaaa
aaatacagagaatcagttggagctgtttacattgatgcaacaccagatgatggagtctca
aattcagtagatgcaaaaccaggcagcagggctgatgataaaccagcaagttgccagtca
gtcccagaacagaataaaaacagctcgacactccctgagaacaccagcatggatgctacc
ctgccatga
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