Panicum virgatum (switchgrass): 120664173
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Entry
120664173 CDS
T07260
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120664173
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120664173
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120664173
Protein phosphatases and associated proteins [BR:
pvir01009
]
HAD phosphatases
Fcp/Scp phosphatases
120664173
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120664173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
120664173
NCBI-ProteinID:
XP_039799161
LinkDB
All DBs
Position
3N:complement(8757906..8761543)
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AA seq
743 aa
AA seq
DB search
MSSTPAEASAAAGPAASVRTVASAVLRVQMALLDGAAASNEALLHAAASALLSRADYDDV
VTERTIADACGNPACPNPLPAAAAAGGPRFHISLREHRVYDLEEARRFCSERCLVASAAL
AASLPADRPFGVPPERLDAVVALVEGAGAGEGQGLGFRDADEKKKDGGRKLEIKEKEVSG
SGEVTLQDWVGPSDAIEGYVPRRDRTTEGQKPAMQNKVAGIKLSRIENVDSRNAAPGEDG
MVGTSPSVETHVSSEVIAEKMGNMALSDNTKPPRKETTKTPSKMLKQEEDNNMLSSCISD
SIAKQLEDVVLEEKRASEKTKTSKASSKSQKSKSRKRPGGSDGHEVDFTSTIIVGDASTN
MEQGTMNQYNYLSSSIMTDNYASSSQCAAKDSTQAYAEQLCKEFSEAVSTGKDETSDEKM
KPVLKSSMKLPGSKSIMQSVTWADENGSVLETSKLYESPSSSIKQSEEGIDISLRRASAE
ACAAALIEAAEAISSGTSEIDDAVSKAGIIILPDMLHQKQYSNDKSSGGDEEPEIDRDVL
KWPKKTVLLDTDMFEVDDSWHDTPPEGFSLTLSGFATIWAALFGWISRSSLAYVYGLDGG
SVEELLIANGREYPEKIVLKDGHSGEIRRALDTCVCNALPVLVSNLRLQIPVSKLEITLG
YLIDTMSFFDPLPSLRSRQWQVVVLVLLHALSVHRLPALAPVISNSKLLQKMLNAAQVSR
EEYDSMVDLFLPFGRSIQTPMPI
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgagctccacgcccgccgaggcgtccgccgccgcgggtccggcggcgtcggtgcgtacg
gtggcctcggcggtgctccgcgtccagatggcgctcctcgacggcgccgcggcctccaac
gaggccctcctccacgcggccgcctccgcgctcctctcccgcgccgactacgacgacgtc
gtcaccgagcgcaccatcgccgacgcttgcggcaaccccgcgtgccccaacccgctcccc
gcggccgccgcggccggcgggccccggttccacatctccctccgcgagcaccgcgtctac
gacctcgaggaggcgcgcaggttctgctccgagcgctgcctcgtcgcctccgcggccctg
gcggcgtcgctccctgccgatcgccccttcggggtcccgcccgagcggctcgacgccgtg
gtcgcgctcgtcgagggcgccggcgccggggaggggcaagggttagggtttcgcgatgcg
gatgagaagaagaaggacggggggaggaagctggagatcaaggagaaggaggtctctggg
tcaggggaggtcacgctgcaggactgggttgggccctcggatgccatcgaggggtatgtc
ccgcgccgcgaccgcactaccgaagggcaaaagccagctatgcagaacaaagttgctgga
attaagctgtccagaatcgagaatgtggattctaggaatgctgctcctggtgaagatggc
atggtaggtacatctccatcagttgaaacacatgtgagctcagaagtaatagctgagaag
atgggcaacatggctcttagtgataatacaaagccacctagaaaggagacaactaaaacc
ccatcaaagatgctgaagcaggaggaagataacaatatgttgtcatcttgcatatctgat
tccattgcaaagcaactggaggatgtagttctggaagagaaaagggctagtgagaaaaca
aaaacaagtaaagcgtcatcaaagtcacagaagagtaagtctagaaaaaggcctggtgga
agtgatgggcatgaggtggactttacaagtacaatcattgttggggatgcttcgacaaac
atggagcaagggacgatgaatcagtataactacttgtcaagttctataatgacagacaat
tacgcctcatcatctcagtgtgcagcaaaagattcaacacaagcttacgctgagcagcta
tgcaaagaatttagtgaagcagtgagcactggaaaagatgagacaagtgatgagaagatg
aaacctgtactgaagtcttcaatgaagcttcctgggtctaagagcattatgcagtctgtg
acatgggcggatgagaatggaagtgttctagaaacaagcaaactatatgaaagcccttca
agtagtataaaacagtctgaggaaggcatagacatttcactaaggcgtgcatctgcagag
gcttgtgctgctgcacttattgaggcggcagaagctatttcttcaggcacatcagaaata
gatgatgcagtttcaaaggctggaatcatcatattgcctgacatgcttcaccagaaacaa
tacagcaatgacaaaagcagtggcggagatgaagaacctgaaattgatagggatgtcttg
aagtggcctaagaagactgtgcttctggatacagacatgtttgaggtcgatgattcttgg
catgacacgcctccagaaggtttcagtctaacactatccggttttgcaacaatatgggct
gcgctatttggatggatctcccggtcatctttggcctatgtgtatgggcttgatgggggt
tccgtggaagagttgttgattgccaatgggcgggaatatcctgagaagatagttttgaaa
gatgggcactcgggggaaataagaagagctctagacacatgtgtttgcaatgccctgcca
gtacttgtatcaaacttgaggttgcagatcccggtttcaaagttggagatcactctgggc
tacttgatcgacacgatgtcattttttgacccgctcccttctctgcgatcaaggcagtgg
caagtggtggttctggtactgcttcatgcgctctccgttcaccggcttcctgcccttgct
cctgtcatctcaaattcaaagcttctgcaaaagatgctgaacgcagctcaggttagcaga
gaggagtacgactcgatggtcgatctcttcctcccttttggaaggtccattcagacaccc
atgccgatttag
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