Panicum virgatum (switchgrass): 120664189
Help
Entry
120664189 CDS
T07260
Name
(RefSeq) ABC transporter B family member 4-like
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120664189
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120664189
04147 Exosome [BR:
pvir04147
]
120664189
04090 CD molecules [BR:
pvir04090
]
120664189
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120664189
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120664189
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120664189
CD molecules [BR:
pvir04090
]
Proteins
120664189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_29
AAA_22
Zeta_toxin
AAA_16
AAA_21
RsgA_GTPase
DUF87
AAA_15
DEAD
AAA_30
AAA_7
DUF815
SbcC_Walker_B
G-alpha
Motif
Other DBs
NCBI-GeneID:
120664189
NCBI-ProteinID:
XP_039799184
LinkDB
All DBs
Position
3N:8943154..8949402
Genome browser
AA seq
1278 aa
AA seq
DB search
MSESSRAFQLDAPSSSAAGAGAGAGAGPARGWKAGPSGGSVPFYRLFAFADGADAALMSL
GALGAVANGAALPLMTVLFGRLIDAFGGAATTRDVVGRVSGVSLDFVYLAVASAAASFLQ
VACWMITGERQAARIRNLYLRTILRQEIAFFDQHTNTGEVVGRMSGDTVLIQDAMGEKVG
KFIQLLVTFVGGFAVAFAQGWLLTLVMLATIPPLVLAGAVMSNVVARMASLGQAAYAEAA
VVVEQTIGSIRTVASFTGEKRAVDKYSKSLKRAYSSGVREGLAAGVGMGVVMVLLFCGYS
LGIWYGAKLILEKGYTGAQVMNVIFAVLTGSLALGQASPSMKAFAAGQAAAYKMLETINR
EPEIDAYSTRGRKLDDIQGGIEFREVYFSYPTRPDEQIFRGFSLAIQSGTTVALVGQSGS
GKSTVISLIERFYDPQLGEVLIDGVDLKEFQLRWIRSKIGLVSQEPVLFDASIRDNIAYG
KDDATDEEIRAAAELANASKFIDKMPQGLSTSVGEHGTQLSGGQKQRIAIARAILKNPRI
LLLDEATSALDTESERIVQEALDRVMANRTTVIVAHRLSTVRNADTIAVIHRGSVVEKGS
HHELVRDPEGAYRQLIRLQEASHGSEGANYQNKSIRNGDSEICAGKQTPTNQSATIRSPQ
NNSRNHSLSVSFSVPLEIDVQDRSSKNADEEIEQEVPLSRLASLNKPEIPVLILGSIASA
VSGVIFPIFAILLSNVIKAFYEPPRVLRKDAEFWSSMFLVFGAVYFLSLPLGSYLFSVAG
CKLIRRIRLMTFEKVVNMEIEWFDYPENSSGAIGARLSVDAAKVRGLVGDALQLAVQNSA
TLVAGLVIAFISNWELSLIILALIPLIGLNGWIQMKFIQGFSADAKLMYEEASQVANDAV
SSIRTVASFSAEEKVMDLYKKKSEGPLRAGIRTGIINGIGFGVSIFLLFGVYAASFYAGA
RLVEDGKTTFPKVFMVFLALSMAAIGVSHTSTLTSDSSKAKSAISSIFAIIDRKSRIDPS
DDTGVTLEPLSGDIEFQHVRFRYPTRPDVQIFQDLCLTIQSGKTVALVGESGSGKSTAIS
LLQRFYDPDAGHILLDEVDIQKFQLRWLRQQMGLVSQEPSLFNDTIRANIAYGKEGEATE
SDVVAAARLANAHKFISSLHQGYDTMVGERGAQLSGGQKQRVAIARAIVKDPKILLLDEA
TSALDAESERVVQDALDKVMVSRTTVIVAHRLSTIQGADVIAVVRNGVIIEKGRHDTLMN
IEGGAYASLVALHSAAPS
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtccagcagggcgttccagctcgatgcgccgtcgtcgtcggccgccggcgcc
ggcgccggcgccggcgccggccccgcccgcggctggaaggctggcccgagcggcggcagc
gtgccgttctacaggctgttcgcgttcgcggacggcgccgacgcggcgctcatgtccctg
ggcgcgctcggcgccgtcgccaacggcgcggccctgccgctcatgaccgtcctcttcggc
cgcctcatagacgccttcggcggcgccgccaccacccgcgacgtcgtgggccgcgtctcc
ggggtctcgctcgacttcgtctacctcgccgtcgcctccgccgccgcctcgttcctgcag
gtggcttgctggatgatcaccggcgagcgccaggcggcgcggatacggaacctgtacctc
aggaccatcctgcgccaggagatcgccttcttcgaccagcacaccaacaccggcgaggtc
gtgggccggatgtccggcgacacggtgctcatccaggacgccatgggcgagaaggtcggc
aagttcatccagctgctcgtcaccttcgtcggtggcttcgccgtggccttcgcgcagggc
tggctcctcacgctcgtcatgctcgccaccatcccgccgctggtgctcgccggcgccgtc
atgtccaacgtcgtcgccaggatggcctccctcggccaggccgcctacgcggaggccgcc
gtcgttgtcgagcagaccatcggctccatcagaacagtcgcgtccttcactggcgagaag
cgagcggtggataagtacagcaagtcgctcaagagagcgtacagctctggcgtcagggaa
ggtctcgccgccggcgtcggcatgggcgtcgtcatggtgctcctcttctgcggctactcc
ctggggatttggtacggcgccaagctcatcctggagaagggctacaccggcgcccaagtc
atgaatgtcatctttgcagtgctcactggctcactagctctgggtcaggcatcaccgagc
atgaaagcatttgcggctgggcaggctgcggcgtacaagatgcttgaaacaatcaacagg
gagccagagatcgatgcgtacagcacaagaggtaggaagctggacgacattcaggggggc
attgagttcagggaagtttatttttcatacccaacaaggcctgacgagcagatcttcaga
ggtttctctcttgccatacagagtggcacaactgttgcgctcgttggccagagcggaagt
ggcaaatcgacagtcatcagcttgatcgagcggttctatgaccctcagcttggtgaagtt
ctgatagatggtgtggacctcaaggagtttcagttgaggtggatcagaagtaaaattggt
cttgtgagtcaagagccagtcctgtttgatgctagcataagagacaacatagcttatggc
aaggatgatgcaacagatgaggaaatcagagctgcagctgagcttgctaatgcctccaaa
ttcatagataaaatgccccagggtttatctacttcagttggtgaacatggaacacaactt
tctggtggtcagaagcaaagaatcgccattgcgagagcaattctcaaaaatccaagaatc
ctgctattggatgaagcaacaagcgctttggacactgaatctgaaaggattgtgcaagag
gctcttgacagggttatggcaaaccggacaactgtaatagttgcacaccgtttgagtact
gtcaggaatgctgataccatcgccgtcattcatcgaggatcagtagttgaaaaaggttca
caccatgagcttgtaagggatccagagggagcttacagacagttgatacgcctacaggaa
gcaagtcatggttctgagggcgcaaactaccagaataagtcaatcaggaatggtgattcc
gagatttgtgcaggcaaacagacgccaacaaatcagtcagctaccataaggtcacctcag
aacaacagcagaaatcactcgttatcagtatcattcagcgtacctcttgaaatcgacgtc
caggaccgatcatcaaagaatgcagatgaagaaattgagcaggaagtgccccttagccgc
ctcgcatcacttaacaaaccggaaatcccagtgcttattcttggttctattgcttcggct
gtcagtggagtgatcttcccgatatttgccatactcctatcaaatgtgatcaaagcattc
tatgagccgccgcgtgttctgaggaaggatgccgagttttggtcatctatgttcttggta
ttcggtgcagtgtacttcttgtcacttcctcttggctcataccttttttcagtggctggg
tgcaagttgatcagaaggatcagactgatgactttcgaaaaggtggtcaatatggagatc
gaatggtttgattacccagagaactcaagtggagcaattggggcaaggctatcggttgat
gctgcaaaagttcgggggcttgtgggtgatgcgcttcagctggcagtgcagaattcagca
actttagttgctggtttggtaattgctttcatatcgaactgggagctatcacttatcata
ttggccttgataccgctaattggcctcaatggatggatccagatgaagtttattcaggga
ttcagtgcagatgcaaagttgatgtacgaggaggcaagccaagtagcaaatgatgcagtg
agcagcataaggacagtggcgtcattttcagctgaagaaaaggtgatggatttgtacaag
aaaaaaagcgaaggacccttaagagcagggatcaggacaggaataataaatggtattggc
tttggggtttccatattcttgctgtttggagtctatgcagccagcttctatgctggtgcg
cggcttgttgaggacggaaaaacaacttttcccaaagttttcatggtatttcttgctctc
agtatggcagcaatcggggtgtcacacacgagcaccctcacatcagattcttccaaagca
aaatcagccatatcttctatatttgccatcatagaccgaaaatcgaggattgatccaagt
gatgacactggggtaaccctagagccactaagtggtgacatcgaatttcagcatgtgaga
ttcagatatcccacacggcctgatgttcagattttccaagacctgtgcctgacaattcaa
tctgggaagactgttgcgcttgttggagagagtggcagtggcaaatcaactgcaatatca
ttgctgcagagattctatgatcctgatgcaggccacatactcctagatgaagtggacata
cagaagttccagctgaggtggctgaggcaacagatgggactggtgagtcaagaaccatct
ctgttcaatgacacgatccgggcaaacatcgcctacggaaaggaaggggaagcgacagaa
tcggatgttgtggctgctgcgcgactggcaaacgcacacaagttcatcagttcattgcat
cagggatacgacacaatggttggggagcgtggggctcaactatccggagggcagaagcag
cgcgtggccattgctcgtgccatcgtgaaggatcccaagatcctcctcctcgatgaggcg
acgagtgcgctcgacgccgaatccgaacgggtagtgcaggacgctctggacaaggtgatg
gtgagcagaacaacagtcatcgtggcacaccgcctgtccacgatacagggcgccgacgtg
atcgcggtggtgaggaatggtgtgatcatcgagaaggggaggcacgataccttgatgaac
atcgagggcggggcgtacgcgtccctggtcgcgttgcattcagcagcaccgtcgtag
DBGET
integrated database retrieval system
