Panicum virgatum (switchgrass): 120664226
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Entry
120664226 CDS
T07260
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120664226
09124 Replication and repair
03420 Nucleotide excision repair
120664226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120664226
03036 Chromosome and associated proteins [BR:
pvir03036
]
120664226
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120664226
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120664226
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120664226
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120664226
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120664226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
120664226
NCBI-ProteinID:
XP_039799258
LinkDB
All DBs
Position
3N:complement(9591131..9596261)
Genome browser
AA seq
758 aa
AA seq
DB search
MRFDLDGMPVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS
LANPSRPLRLIYCTRTVHEMEKTLAELRLLFAHLPPAASRSLLALGLSSRKNLCVHPQAS
AAAVRDSVDTACRRLTASWVREKAASDPESTQLCEFYETFDRAAAGGDLAPLMPPGVYTL
ADLRALGRQRRVCPYFLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDAWLANPALPDDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVAF
VASIHSQAGIDQKMLRFCYDRLHSLMMTLEITDTDEFMHIQTICDFATLIGTYTRGFSII
IEPYDERMPDIRDPVIQLSCHDASLAIRPVFDRFETVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRGDPGVVRNYGRLLLEMASAVPDGIVC
FFVSYSYMDGIVNSWHEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIA
REFLRRMAQPYDKMGSGGKKTLLTEEDLHNMAEDAMEI
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgcggttcgacctggatggcatgccggtgcacttcccgtacgcggcgatctacccggag
cagcacgcgtacatgggggagctcaagcgcgccctcgacgcgcgcgggcacgcgctgctc
gagatgcccacgggcaccggcaagacggcggcgctgatctccctcatcacctcctactcc
ctcgccaacccgtcccgcccgctccgcctcatctactgcacgcgcaccgtgcacgagatg
gagaagaccctcgccgagctccgcctcctcttcgcccacctgccccctgccgcctcccgc
tccctcctcgcgctcggcctctcctcccgcaagaacctctgcgtccacccgcaggcgtcc
gccgccgcggtccgggactccgtggacaccgcgtgccgacgcctcacggcctcctgggtc
cgcgagaaggccgcgtccgacccggagtccacgcagctgtgcgagttctacgagacgttc
gaccgcgccgccgccggcggggacctcgcccccctcatgccccccggggtgtacaccctc
gctgacctccgcgcgctgggtaggcagcgccgggtctgcccctatttcctcgccaggcag
atggtcaagtacgccaatgttgtggtgtatagctaccagtacctgctcgatcccaaggtg
gccagcattgtgtcaagggagatgcagaaggagtgtgtggtcgtgttcgatgaggcgcac
aacatcgacaatgtctgcatcgaagcactgagcgtcagcatccgcaagcagacgctagaa
ggcgctgagcggaatctgcggcgtatctcacaagaaattgacaggttcaaggccactgat
gccaataggcttcgtgctgagtacaacagactggtggatgggctggcacagaggggaaat
ctaccaatatcggatgcttggcttgccaatccggctctgcctgatgacattctgaaggaa
gctgttcctggaaacataaggagggctgagcatttccttgctgtattgcgccggcttgtg
agattccttgatggacggctggaaacagaaaacgttgagaatgaaatgcccgttgccttt
gttgcgtcaatccactcccaggctggaatcgaccagaaaatgctcaggttttgttatgac
cggctacactccctaatgatgacactagagataaccgatacagatgagtttatgcacatt
cagaccatctgtgactttgccacattgattggaacttacacacgaggcttttccataata
atagaaccatatgacgaaagaatgcctgacattcgtgatcctgtgattcagctgagctgt
catgatgcttcactcgcaataagacctgtttttgatcgttttgaaacagttgtgatcact
tctggaactctcagcccaattgatctttatcctcgtctcttgaattttaatcctgtgata
agcagaagtttcacaatgtccttaacaagggattgtatttgtcccatggtcttgactcga
ggcagtgatcaactacctgtgagtacaaagtttgatatgcgtggtgatcctggtgtggtg
aggaattatggccgcctcttgctggaaatggcttctgctgttccagatggcatagtttgc
ttttttgtcagttactcctatatggatggtattgtcaacagctggcatgaaatgggaatt
ctgcaggacatcatgcaacataaattagtattcatcgaaactccagatgtcgttgagaca
actttggctcttgataactacagaaaggcgtgcgactgtggaagaggtgctgttttcttc
tctgttgccaggggcaaagttgctgaaggtattgattttgaccgacactatggcagactt
gttatcatgtttggtgttcctttccagtacacactaagccggatattgcttgctagattg
gagtacctaagagagacttttcagataaaagagggcgacttcctgacatttgatgctttg
aggcaagcggcccaatgtgttggccgtgtgattcgctctaaagcagactatgggatgatg
atatttgctgacaagaggtacagtcggcatgataaacggtctaaattgcctgggtggata
ctgtcacacttgcatgatgctcacctaaacctgagcaccgatatggctctgcatatagct
cgagagtttctccggaggatggcacagccatacgacaagatgggaagcggcgggaagaag
acgctcctgaccgaggaggacctgcacaatatggcagaggacgccatggagatttga
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integrated database retrieval system
