Panicum virgatum (switchgrass): 120664314
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Entry
120664314 CDS
T07260
Name
(RefSeq) FACT complex subunit SSRP1-B-like isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120664314
03036 Chromosome and associated proteins [BR:
pvir03036
]
120664314
Transcription factors [BR:
pvir03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
120664314
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
120664314
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
Rttp106-like_middle
HMG_box
SSrecog
HMG_box_2
HMG_WDHD1
CDC45
YL1
Motif
Other DBs
NCBI-GeneID:
120664314
NCBI-ProteinID:
XP_039799402
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Position
3N:12022540..12027908
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AA seq
692 aa
AA seq
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MTDGHHFNNISLGGRGGFNPGQFKLSSGGLAWKKQGGGKIIEVDKADITSVAWMRIPKSF
QLNVVTKEGLFYRFLGFRQQDVSILSDFIQKGTGISPQEKQLSISGHNWGGVEIYGQLNF
LLHLNVSYTLLLSYNLWFYSFSYFLSISGTRLCFNVGEKEAFEVSLADVSQAQMQGKTDV
LEFHVDDTTAANEKGLLMDLSFHVPTSNAQFIGDEHRTSAQMLCQEILHRADGGSPSEAA
VVTFEGIAILTPRGRYSVELHQSFLRLQGQANDFKIQYSSILRLFILPKSQNPHTFVVIA
LDLPIRKGQTLYPHIVIQFETEAIVERELGLSEQVLAEKYKDRLKGSYRDQIHVVFSNVL
CGLSGAKVTRPSTFRSCQHGYAVKSALKAEDGLLYPLEKAFFFLPKPPTLILYEEIEYVL
FERHGAGGVNISFQYFDLLVKLKNDQEHLFSNIQRIEYQNLFSFISDKHLKILNLGDGQR
RNGGVTAVIESTDDDSVDPHLERIKNQACNEESDEEDEDFVADKDDSGSPSDDSEEEDFD
ASMSGGEKENSSKMEASISKPRVKRKLNSGSDEGSQNKKPKRKKEQKSGVDEGSKKKKAK
RKKDPNAPKRAMVPFMYFSKAERANIKNSNPQLTTTDIAKKLGERWQKMTAEERQPYLEQ
SRADKERYEQESAAYRGAAAQQGPGDGSEGRL
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgacggacggccaccacttcaacaacatctccctcggcggccgcggcggcttcaaccct
ggacagtttaaacttagttcaggaggacttgcgtggaagaagcaaggtggaggaaagatt
atcgaggttgataaagctgatatcacttcagtagcatggatgaggatcccaaaatctttt
cagcttaatgttgtgacgaaggaaggcctattttacaggttccttggctttcgtcaacag
gatgttagcatcctgagtgactttatacaaaaaggcacgggaatctcaccacaggagaag
cagctttccattagtgggcataactggggtggagttgaaatctatggtcagctaaacttt
ctattgcatttaaatgtttcctatactctattgctttcatataacctctggttttattcc
ttttcctattttctttccatttcaggaactaggctttgctttaatgttggtgagaaggaa
gcatttgaagtctctctagcagatgtatcacaggctcagatgcaagggaaaacagatgtt
ctcgagttccatgtagatgatactactgcagctaatgagaagggtttgctgatggactta
agttttcatgtaccaacttcaaatgctcaatttatcggggatgagcatcgtacttcagct
cagatgttgtgccaggagattttgcatagagctgatggtgggagcccctcagaagcggct
gtagttacatttgaaggaattgcaatcctcacaccaagaggtcgatacagtgttgagctt
catcagtcattcttgcgactccaaggacaagctaatgatttcaaaatccagtatagcagt
attcttcgcctctttattttgccaaagtcacaaaatcctcatacttttgtggttatcgca
cttgatctaccaattcgaaaaggacaaacattgtatccccacattgttattcagtttgag
acagaggcaattgtagaaagggagctgggattgagtgagcaagttttggctgaaaagtac
aaagataggcttaagggctcttacagggatcaaatacatgtggtattctccaacgtcctt
tgtggcctatctggtgctaaagtgactaggccaagtacgttccgcagttgccaacatgga
tatgcggtcaaatcagcacttaaagctgaagatggtttgctttatccacttgaaaaggcc
ttcttctttctgccaaagcccccaacactcattctttatgaggagattgaatatgtattg
tttgagcgtcatggtgccggtggtgttaatatatcattccagtattttgacctcttggtc
aagctgaaaaatgatcaagaacatctcttcagtaacatccaaaggattgaataccaaaac
ctgttcagcttcattagtgacaagcatttgaaaattctgaatcttggagatggccaaagg
agaaatggtggtgttacagctgttatagagagcaccgatgatgattctgtggatccacat
ctggagcgaattaaaaatcaagcttgtaatgaggaaagtgatgaagaggatgaagatttt
gtggcggacaaagacgatagtgggtctcctagtgatgattctgaagaggaagactttgat
gctagtatgagcggaggtgaaaaggagaattcttccaagatggaagctagtatctcaaag
ccgcgtgtgaaaaggaagctgaatagtgggtctgatgaaggttctcagaataaaaaacca
aagagaaagaaagagcagaagagtggggtcgatgaaggttctaaaaagaaaaaggcaaaa
aggaagaaagatccgaatgcccctaaaagagccatggttccattcatgtacttctcgaag
gctgagcgagctaatataaagaatagcaaccctcaactgactaccacagacattgcaaag
aagctcggggaaagatggcaaaagatgacagccgaggagagacagccatacttggagcaa
tcccgagccgacaaggaacgttacgagcaggagtctgccgcctaccgtggtgcagcagct
cagcagggccccggcgacgggtcggaaggaaggttatag
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