Panicum virgatum (switchgrass): 120664316
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Entry
120664316 CDS
T07260
Name
(RefSeq) FACT complex subunit SSRP1-B isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120664316
03036 Chromosome and associated proteins [BR:
pvir03036
]
120664316
Transcription factors [BR:
pvir03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
120664316
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
120664316
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
Rttp106-like_middle
SSrecog
HMG_box
HMG_box_2
HMG_WDHD1
CDC45
Motif
Other DBs
NCBI-GeneID:
120664316
NCBI-ProteinID:
XP_039799406
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All DBs
Position
3N:12030249..12035828
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AA seq
638 aa
AA seq
DB search
MTEGHHFNNISLGGRGGGNPGQFKLYSGGLAWKKQGGGKIIEVDKADITSVTWMKIPKSY
QLSVGTRDGLCYRFFGFREQDVSGLTNFIQKSTGITPEEKQLSISGHNWGGVAINGNMLC
FNVGSKEAFEVSLADVSQSQMQGKTDVVLEFHVDDTTGANEKDSLMDLSFHVPTSNTQFV
GDEHRTSAQMLWQAISVQIDGGGSSETAVATFDGIAILTPRGRYSVELHQSFLRLQGQAN
DFKIQYSSILRLFVLPKSHNPHTFVVITLDPPIRKGQTLYPHIVIQFETETVVERELTLS
EEVLAEKYKDRLESSYRGLIHEVFSMVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKAEDG
LLYPLEKGFFFLPKPPTLIPHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRN
IQRNEYHNLFNFISGKHIKILNLGDGQGRAGGVTAVLQSTDDDSVDPHLERIKNQAGNEE
SDEEDEDFVADKDDSGSPTDDSDEDGSDASLTGGEKEKSSKKEASSSKPPVKKKQKSVPD
EGSQKKKPKKKKDPNAPKRAIAPFMYFSKAERANIKSSNPELATTEIAKKLGERWQKMSA
EERQPYIEQSQVDKQRYAEESAAYRGATTQQGSGDGSE
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaggccatcacttcaacaacatctcccttggaggccgcggcggcggcaaccct
gggcagttcaaactttattcaggaggactggcatggaagaagcaagggggaggaaagatc
attgaggttgataaagctgatatcacatctgtgacatggatgaaaattcctaaatcctat
cagcttagtgttgggacaagggacggtctctgttacaggttctttggcttccgtgaacag
gatgttagcggcctgactaacttcatacaaaaaagcacgggaatcacaccagaggagaag
cagctttccattagtgggcataactggggtggagttgcaataaatgggaatatgctttgc
tttaatgtcggttcaaaggaagcatttgaagtctctctagcagatgtgtcacagagtcag
atgcaagggaaaacagatgtcgtcctagagttccatgtcgatgatactactggggctaat
gagaaagattcgctgatggatttaagttttcatgtaccaacttcaaatactcaattcgtt
ggagatgagcatcgtacttcagctcagatgctatggcaggctatatcagttcaaattgac
ggtgggggctcctcagagactgctgttgctacattcgatggaattgcaattcttacacca
agaggtcgatacagtgttgagcttcatcagtcatttttgcgactccaaggacaagctaat
gatttcaagatacagtatagcagtattcttcgcctctttgttttaccaaagtcacacaac
cctcatactttcgtggttatcacgcttgacccaccaattcgcaaaggacaaacattatat
cctcacattgttatccagtttgagacagagaccgtggttgaaagggaactgacattaagt
gaggaggttttggctgaaaaatacaaggataggctagagagctcttacaggggtctaata
catgaggtattctccatggtccttcgtggcttatctggtgctaaagtgacaaggccaagt
acattccgcagttgccaagatggatatgcagtcaaatcatcacttaaagctgaagacggt
ttactttatccacttgaaaagggctttttctttctgccaaaaccccctaccctcattcct
catgaggagattgaatatgttgaatttgagcgtcatggtgctggcggtgctagtatttca
tctcattattttgacctcctggtaaagctgaaaaatgatcaagaacatctcttcagaaac
atccaaaggaacgaatatcataacctgttcaacttcatcagtggtaagcacataaaaatt
ctgaatcttggagatggtcaaggtagagctggtggtgtcactgctgttcttcagagtact
gatgatgattctgtcgatccacatctggagaggataaaaaatcaggctgggaatgaggaa
agtgacgaagaggatgaagattttgtggcagacaaggatgatagtggatctcctactgat
gattctgatgaggatggctctgatgctagtttgaccgggggagaaaaggagaagtcttcc
aagaaggaagcaagtagctcaaagccacctgtgaagaagaagcagaagagtgtgcctgat
gaaggttctcagaaaaagaagccaaagaagaagaaagatccgaatgcccctaaaagagcc
atagctccattcatgtacttctcaaaggctgagcgagctaatattaagagcagtaatcct
gaactggctaccacagagatcgcgaaaaagctcggggagaggtggcaaaagatgtcagct
gaggagaggcaaccatacattgaacagtcccaggtcgacaagcaacgatatgcggaagag
tctgccgcctatcgcggtgcaaccactcagcagggctccggcgatgggtcggaatga
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