Panicum virgatum (switchgrass): 120664391
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Entry
120664391 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase ATL42-like
KO
K10664
E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120664391
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120664391
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
120664391
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
Prok-RING_4
Prok-RING_1
zf-RING_16
zf-RING_4
FANCL_C
RINGv
Tmpp129
Motif
Other DBs
NCBI-GeneID:
120664391
NCBI-ProteinID:
XP_039799528
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All DBs
Position
3N:complement(13046540..13048585)
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AA seq
409 aa
AA seq
DB search
MPLLRQLLPILVVLVSAAACSAAAQPTTAEAAPESTPGAGIRVSFRPSVAIVVGIFTMIF
SLTLLLLMYAKFCHSSSTPLPAAIPTAPAPPQGGVPKPVVESLPFFRFATLRGARQGMEC
SVCLARFDDADHLRLLPRCRHAFHLACVDRWLESNASCPLCRARVDADDASLGLKYPSSA
RIVFGGDGLSSGRLGDDAASGRDLLDIFVERVPSARFAGAAGRKQADEEAPARAPSPELD
RHKHRIIVSDVVFKSRWSDLNSAALIGLDTEMMRSMSSGRFSLPDSPELNEAKLSTAVEE
EVGGAAPTTERKRLLVDGRGGGGWCSSSAAVDAVPAAASRMISSGVRSMSEIVSLPRLRG
AARERLSEEENRRWLPIARRTARWFAGRARAKEEAEPGAASAHVVAAHV
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgctgcgccagctcctccctatcctcgtggtcctcgtgtccgcggcggcgtgc
tccgcggccgcgcagccgaccaccgccgaggccgctcccgagagcacgccgggcgccggc
atcagggtctcgttccgccccagcgtggccatcgtggtcggcatcttcaccatgatcttc
tccctcactttgctcctcctcatgtacgccaagttctgccactcgtcctccacgcccctc
cccgccgcgatcccgaccgcccccgcgccgccgcagggcggcgtcccaaagccggtggtc
gagtcgctgcccttcttccgcttcgccacgctgcgcggggcgcgccaggggatggagtgc
tcagtgtgcctcgcccgcttcgacgacgccgaccacctccgcctcctcccgcgctgccgc
cacgccttccacctggcctgcgtcgaccgctggctcgagtccaacgccagctgcccgctc
tgccgggcgcgcgtcgacgctgacgacgcctcgctcgggctcaagtacccctccagcgcc
cgcatcgtcttcggcggcgacggcctgtcctccggccgcctcggcgacgacgcggcgagc
gggcgcgacctcctcgacatcttcgtggagcgcgtgccgtccgcgaggttcgcgggggcc
gcgggccggaagcaggcggacgaggaggcgccggcgagggcgccgtcgccggagctggac
aggcacaaacaccgcatcatcgtgtcggacgtcgtgttcaagagccggtggagcgatctc
aactccgccgccctcatcggcctcgacaccgagatgatgcgctccatgtccagcggccgc
ttctccctcccggattccccggagctgaacgaagccaagctatccacagcagtagaggag
gaggttggtggtgccgcaccgacgacggagaggaagcggctgctggtggacggccgaggc
ggcggcgggtggtgcagcagctccgcggcggttgacgccgtgccggcggcggcgtcgagg
atgatatcctccggggtgcggtccatgtcggagatcgtgagcctgcctcggctgcgcggc
gcggcgagggagcggctgtcggaggaggagaaccggcggtggctgccgatcgcgcggcgg
acggcgcggtggttcgccggccgcgccagggcgaaggaggaggccgagccgggagcggcg
agtgcccacgtcgtggcggcgcatgtgtga
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integrated database retrieval system
