KEGG   Panicum virgatum (switchgrass): 120664399
Entry
120664399         CDS       T07260                                 
Name
(RefSeq) notchless protein homolog
  KO
K14855  ribosome assembly protein 4
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pvir03009]
    120664399
Ribosome biogenesis [BR:pvir03009]
 Eukaryotic type
  Pre-60S particles
   Other pre-60S particles
    120664399
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I WDR55 DSE1_N WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR19_1st ASA1 NBCH_WD40 Beta-prop_WDR41 Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_DCAF4 NLE Beta-prop_RIG_2nd Beta-prop_DCAF12 CFAP251_N Beta-prop_WDR35_TULP_N Beta-prop_VPS8 Beta-prop_NOL10_N eIF2A WD40_RFWD3 Beta-prop_SPT8 RMC1_N Tricorn_2nd Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_Vps41 Ge1_WD40 PAC11 WDR54 TRM82_WD PD40 Beta-prop_ELP1_1st Tricorn_N Beta-prop_WDR75_2nd Beta-prop_ACSF4 TRAP-delta Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 120664399
NCBI-ProteinID: XP_039799540
LinkDB
Position
3N:complement(13142982..13147820)
AA seq 480 aa
MDSQAPPAAAAATDANTSVMCQLVSPEGDHLGAALYLPQNVGPPQLQEIVNHLLHNEDKL
PYAFYIGDEELSVQLGTYMQQKNANVEVTLRIVYQPQALFRIRPVNRCSATIAGHTEAVL
AVSFSPDGKCLASGSGDTSVRFWDLDTQTPLFTCKGHKNWVLCIAWSPDGKHLVSGSKSG
ELILWDPKTGKQLGSPLMGHRKWITAVSWEPAHLQAPCRRFVSASKDGDARIWDITTRKC
VISLTGHTNSVTCVKWGGDGLIYTGSEDCLIKVWETSQGKLVKTLQGHGHWVNSLALSTE
YVLRTGPYDHTGKTYSTAEEIKEAALARYKKMRGNAPERLVSGSDDFTMFLWEPAISKQP
KARMTGHQKLVNHVYFSPDGQWLASASFDKSVKLWNGITGKFVAAFRGHVADVYQISWSA
DSRLLLSGSKDSTLKVWDIRTHKLKQDLPGHADEVYAVDWSPDGEKVASGGKDRVLKLWM
NT seq 1443 nt   +upstreamnt  +downstreamnt
atggacagccaggctcctcccgctgccgctgccgctaccgatgccaacaccagcgtcatg
tgccagctggtcagccccgaaggagaccatctcggtgcggcgctctatctgccgcagaac
gtcgggcccccgcagctccaggagattgtcaatcacctcctccacaatgaggacaagctg
ccctatgcattttacattggagatgaggagctctctgtccagctgggcacttacatgcag
caaaagaacgccaatgttgaggttacgctgcgcatagtatatcaaccacaagcacttttc
cggatcaggccagtcaaccgctgctcggctacgattgctggtcacacagaagctgtactt
gctgtttcttttagccctgatggaaaatgtttggcgagtggttcaggtgacaccagtgtt
cgcttttgggaccttgatacacagactccattattcacatgcaaaggacacaaaaattgg
gttctctgcattgcgtggtcgcctgacgggaaacatcttgttagtggaagcaagtcagga
gaacttatattatgggacccaaaaactgggaagcaattgggctctccacttatgggacac
aggaaatggattactgctgtatcttgggagccagcccatttgcaagctccgtgccgccgc
tttgtaagtgcaagcaaggatggcgatgctcgcatttgggatatcaccacaaggaaatgt
gttatttcccttacaggtcacactaattcagtgacctgtgtcaagtggggtggtgatggt
ttgatttatacaggttctgaagattgtttgatcaaagtatgggaaacatctcagggaaag
ttggtcaaaacattgcagggtcatgggcactgggtgaattcgcttgccttgagcacggaa
tatgttctacgcactggaccatatgaccatactggcaagacatactcaaccgcagaggaa
attaaagaggcagctcttgcgagatacaagaagatgaggggtaatgctcctgagagacta
gtttccggttctgatgatttcacaatgtttctttgggaaccagcaattagtaaacaacct
aaagctcgcatgactggtcatcagaagcttgtgaaccatgtgtacttttcacctgatggg
caatggttagccagtgcctcctttgataaatctgtcaagttgtggaacggtatcacagga
aagtttgttgcagctttcagggggcatgttgcagatgtctaccagatcagctggtctgct
gacagtaggcttctgctaagtggaagcaaggattcaaccctaaaggtttgggatattcga
acgcacaagttgaaacaggacctaccgggccacgcggatgaggtgtatgccgtggattgg
agccctgacggtgaaaaggtggcatctggtgggaaggatcgggtcctcaagctttggatg
tga

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