Panicum virgatum (switchgrass): 120664422
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Entry
120664422 CDS
T07260
Name
(RefSeq) eukaryotic translation initiation factor 5B-like
KO
K03243
translation initiation factor 5B
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
pvir03012
]
120664422
Translation factors [BR:
pvir03012
]
Eukaryotic type
Initiation factors
eIF-5
120664422
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
IF-2
GTP_EFTU_D4
GTP_EFTU_D2
MMR_HSR1
Roc
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
120664422
NCBI-ProteinID:
XP_039799588
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All DBs
Position
3N:13363116..13369409
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AA seq
1287 aa
AA seq
DB search
MGRKKNVDIDDDEYSFPQDDAGADPAPPPPAAEKEKPKKGGKKGKKGGKAAAPDDDDYEP
PPPPPAAEEDDDEPVNLVFTGKKKKKKGAAAPAASFSAFNALEEADEDQEEEEPAPAAAA
EPEATADDDDLDFDFSKAKKKKKKDKVARFAPAKDEDDEPAPLAPSMADDGDEDPLVAAA
AASKKPQKKQKKKGTFATDDEDIVKILAEMEDHSQPADEPEPEEVKAQDSVLAPDADDTA
GKKSKKKKKKGGFMMDGEDVDQILAQMEDHPPPVEEPQPNDMKDEAPIAAPAPVDDAEGK
KSKKKKKKSGRTAQEEDELDKLLAELDSPPAEKEDKPVQAPHSASVAKEDVGAAEDGNVD
DKAGEGGEVESAAAKKKKKKKEKEKEKKAAAKGAEAKKEEEKEQEAPKGKVDMKKLPKHV
REMQEALARRKEAEERQKREEEERLRKEEEERLRREEEERKAEEAKRRKKEREKEKLLKK
KQEGKLLTGKQKEEAKRLEAMRRQFLEQSELQKAEGTAPETKKRPIYDFKKKKAQPKATE
TAKVVEEQQEEVNEAINDEEEYVLVDQESQSQVEESEEKTEPDQEAEEPKPEEQEEEDED
EWDAKSWDDIDVNLPKTSAFDEEEAKPVVKKSEPVQKQENSKAQPAIPSVKMVIPPAANS
KKSETDDGGASNGNLKRSKKKGPVKEDSSKNGSDLRSPICCILGHVDTGKTKLLDCIRRT
NVQEGEAGGITQQIGATYFPTENIRERTRELKADATLKVPGLLVIDTPGHESFSNLRSRG
SSLCDIAILVVDIMHGLEPQTIESLNLLKSRDAVFIVALNKVDRLYGWKKCPNAPIVKAL
KQQNEDVKREFNMRLTDIVTQFKMQGVNTALYYKNKEMEDTFNIVPTSAVSGEGIPDLLL
LLVQWAQKTMEEKLTFVNEVQCTVLEVKVVEGHGTTVDVVLVNGILHEGDQIVVCGMQGP
IVTTVRALLTPHPMRELRVKGNYLHHKEIRAAQGVKISAQGLEHAIAGTALYVLGPDDDL
DKLKDAVMEEMTRVRSRIDKSGEGVYVQASTLGSLEALTEFLKSPAVNIPFCDFSIGPVH
KKDVMKASVMLERKKEYATILAFDVKVMPDARDLAEETGVKIFVADIIYHLFDQFTAYIN
NLKEEKKKESAEEAVFPCVLKIMPNCVFNKKDPIVLGVDVLEGIAKVGTPLCIPTKEFID
IGKIASIEINHKQVDMAAKGQKVAIKIIANNSDEQQRSFGRHFDMEDELVSRISRRSIDI
LKQNYREDLSKDDWKLVVKLKTILKIQ
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcaagaagaacgtcgacatcgacgacgacgagtactccttcccgcaggacgac
gccggcgccgaccccgctccgccgccgcccgccgcggagaaggagaagcccaagaagggc
ggcaagaagggcaagaaggggggcaaggccgccgcgcccgacgacgacgactacgagccc
cctccgcccccgcccgccgcggaagaggatgacgacgagcccgttaacctcgtcttcacc
ggcaagaagaagaagaagaagggcgccgctgcccccgccgcctcctttagcgccttcaac
gcgctcgaggaggcggacgaggaccaggaagaagaggagcctgccccggccgccgctgcc
gagcctgaggccactgccgatgacgacgacctcgatttcgacttcagcaaggccaagaag
aagaaaaagaaggacaaggtagctcgctttgctcctgccaaagacgaggacgacgagcct
gctcctctggcaccatcaatggctgacgacggagatgaggatcccttggtcgctgccgca
gcagcttcaaagaagccacagaaaaagcagaaaaagaagggtacgtttgccacggacgat
gaggatatcgttaagatcctggctgagatggaggatcattcacagcctgcggatgagcct
gagccggaggaggtgaaagctcaggattctgtgctcgcccctgatgcagatgataccgcc
gggaagaaatcaaagaagaagaaaaagaagggagggtttatgatggatggtgaggatgta
gatcagatcctcgcgcagatggaggaccacccgcctcctgtcgaagagcctcagcccaat
gacatgaaggatgaggcccctattgctgctcctgcccctgtggatgatgctgaagggaag
aaatcaaagaagaagaagaagaagagtggaaggacagcacaggaagaagatgagttggac
aaacttcttgctgaacttgacagccctcctgcggagaaggaggacaagccagtgcaggca
ccacattctgcctcagtggccaaggaggacgtgggagctgcagaggatggtaatgtggat
gacaaggctggggaaggaggagaggtggaatctgctgctgccaagaagaagaagaagaag
aaggaaaaggagaaggagaaaaaggcggcagcaaagggagcggaggctaagaaagaggag
gagaaggagcaagaggcacctaaagggaaggttgacatgaagaagctccctaaacatgtt
cgggagatgcaggaggccctcgccaggaggaaggaagctgaggagagacagaagagagag
gaggaagagcgactgaggaaggaggaggaagagcggctgcggcgcgaggaggaagagagg
aaagcggaggaagcgaagaggaggaagaaggagagggaaaaggagaagttgctcaagaag
aagcaggagggtaagctcttgaccggcaagcagaaagaggaagcaaagaggttggaagcc
atgaggagacagttccttgagcagagtgaactccaaaaggctgagggcaccgcccctgag
acaaagaagaggccaatatacgattttaagaaaaagaaagctcaaccaaaggccacagag
actgcaaaggtagttgaagaacaacaggaagaggttaatgaagctatcaatgatgaagaa
gaatatgtgcttgtggatcaggagtctcagtctcaggtagaggagtccgaggagaaaact
gaacctgatcaggaggctgaagagccaaaaccagaagagcaagaagaggaagatgaggat
gagtgggatgcaaagagctgggatgatattgatgtaaacttgcctaagacaagtgctttt
gatgaggaagaggcgaagcctgttgtcaagaagtccgagcccgttcagaagcaggaaaat
tctaaagcacagcctgcaataccttctgtcaaaatggtcatccctcctgctgcaaactct
aaaaagagtgaaactgatgatgggggtgccagtaatggaaatttaaagcgaagcaaaaag
aaaggacctgtcaaagaggatagctctaagaatggtagtgacctcagatcaccaatttgc
tgcatccttggtcatgttgatactggtaagacaaagctgctagattgtattagacgcacc
aatgtgcaagaaggcgaagctgggggtattacccaacagattggggcgacatacttccct
actgaaaacattagagagaggaccagagagttgaaagctgatgctacacttaaggttcca
ggcctgcttgttattgatacccctgggcatgagtccttcagtaatctgcgttctagaggt
tcgagtttgtgtgatattgccattttggttgttgacatcatgcatgggcttgaacctcag
acaattgaatccctgaatcttttgaagagtcgggatgcagtgtttattgttgctttgaat
aaggttgatcgtctttatggttggaagaaatgtccaaatgctcctattgttaaggcttta
aagcaacagaatgaagatgttaagagggagttcaatatgagacttacagatattgtgaca
caattcaagatgcaaggagtgaatactgctttgtactacaagaacaaggagatggaagat
acctttaacatagtgcctacaagtgctgtaagtggtgaaggcattcctgatttgctcctt
ctgttggttcaatgggcacaaaagacgatggaagaaaagcttacttttgttaatgaagtc
cagtgtactgtactggaagtcaaggtcgtggaaggtcatggtactactgttgatgttgtt
ttggtcaatggtatactgcacgaaggagatcaaatagttgtttgtggcatgcagggaccc
attgtgacaactgtcagagctttgttaacaccacacccaatgagagagcttcgagttaag
ggcaactacctacatcataaggagatcagagctgcacaaggagttaaaatatctgctcag
ggtctcgaacatgcaattgcagggacagctctttacgtgttaggacctgatgatgatcta
gacaaactgaaggatgctgttatggaagagatgacacgggttaggagtcggattgataaa
agtggtgagggtgtctatgtacaggcatctacccttgggtctttggaagctctcactgag
ttcttgaagagccctgctgtcaatattcccttctgtgatttcagtatagggccagtccac
aagaaggatgttatgaaggctagtgttatgcttgagagaaagaaagaatatgcaactata
ttggcctttgatgtcaaagtgatgcctgatgctcgcgatcttgcagaagagaccggtgtg
aagatctttgtggcagatataatataccacctctttgaccaatttacagcatacattaat
aatctgaaggaagaaaagaagaaggaaagtgctgaagaagctgtgttcccttgtgttctt
aagattatgccaaactgtgtcttcaacaagaaggatccaatcgttttgggtgttgatgtc
cttgaaggaatagctaaggttggaactcctctctgcatacccactaaagaatttattgat
attgggaagattgcctcaattgaaattaatcacaagcaagttgatatggccgcgaaaggg
caaaaggtggctataaagattattgcgaacaattctgatgagcagcagaggagtttcggc
agacattttgatatggaagatgagcttgtaagccggatctcaaggcgatctattgatatt
ttgaaacaaaattacagggaggacctctctaaggacgactggaaacttgttgtaaagttg
aaaacaatattgaagatacaatga
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